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Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology1 Artemis Project A Semantic Web Service-based P2P Infrastructure for the Interoperability.

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Presentation on theme: "Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology1 Artemis Project A Semantic Web Service-based P2P Infrastructure for the Interoperability."— Presentation transcript:

1 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology1 Artemis Project A Semantic Web Service-based P2P Infrastructure for the Interoperability of Medical Information Systems (IST-1-002103-STP)

2 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 2 Artemis Architecture The Artemis project addresses the interoperability problem in the healthcare domain The Syntactic interoperability is handled through Web services Semantic Interoperability is addressed by semantically annotating the Web services

3 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 3 Semantic Mediation: Ontology Mapping To annotate Web services we propose  Service Functionality Ontologies  Service Message Ontologies It is not realistic to expect all the healthcare institutes to use the same ontology The differences between disparate Service Functionality and Service Message Ontologies are resolved through Ontology Mapping

4 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 4 Healthcare Informatics Semantics Semantics is domain knowledge! Medicine is one of the few domains to have extensive domain knowledge defined through standards These standards offer significant value in developing ontologies to express the semantics of Web services

5 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 5 What kind of Semantics? Service Functionality Semantics:  HL7 has categorized the events in healthcare domain by considering service functionality which reflects the business logic in this domain  This classification can be used as a basis for defining the service action semantics through a Service Functionality Ontology Service Message Semantics:  Electronic healthcare record (EHR) based standards like HL7 CDA (Clinical Document Architecture), GOM (GEHR Object Model), and CEN TC251's ENV 13606 define meaningful components of EHR so that when transferred, the receiving party can understand the record content better  The meaningful components defined by these standards can be used in developing service message ontologies

6 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 6 HL7 and Web Services The primary goal of HL7 is to provide standards for the exchange of data among healthcare computer applications An event in the healthcare world, called the trigger event, causes exchange of messages between a pair of applications When an event occurs in an HL7 compliant system, an HL7 message is prepared by collecting the necessary data from the underlying systems and it is passed to the requestor, usually as an EDI message Mapping HL7’s message based events directly into Web services may result in several inefficiencies

7 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 7 HL7 and Web Services The input and output messages defined for HL7 events are usually very complex containing innumerous segments of different types and optionality Furthermore, all the semantics about the business logic and the document structure are hard coded in the message This implies that, the party invoking the Web service must be HL7 compliant to make any sense of the content of the output parameter(s) returned by the service Furthermore, the information contained in an HL7 message may be coming from different systems either proprietary or complying to different standards Hence, in Web services terminology, HL7 events correspond to Composite services, whereas more elementary services are needed

8 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 8 HL7 and Web Services Since HL7 has already been through an effort of categorizing the events in healthcare domain considering service functionality, it can be used as a basis for a service functionality ontology

9 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 9 An Example Service Functionality Ontology HealthCareServices PatientAdministration PatientCarePatientReferralScheduling ObservationReporting PatientInfoRequestCancelPatientReferralPatientReferralRequest InsuranceInformation ClinicalInformationDemographicData GetClinicalInformation serviceQualitylocation Properties of the Generic Service Class

10 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 10 Service Messages A Web service in the healthcare domain usually accesses or updates a part of an electronic healthcare record, that is, parts of the EHR constitute the service parameters An electronic healthcare record may get very complex with data coming from diverse systems such as lab tests, diagnosis, prescription of drugs which may be in different formats Electronic healthcare record (EHR) based standards like HL7 CDA, GOM and CEN's ENV 13606 aim to facilitate the interoperability between Medical Information Systems These standards provide conceptual building blocks or meaningful components We propose to use these standards as a basis for Service Message Ontology

11 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 11 Good Electronic Healthcare Record (GEHR) Transaction level Navigation level Content (e.g. observation, subjective, instruction) level Data types (e.g. quantity, multimedia) level Clinical models are expressed outside the GOM in the form of archetypes

12 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 12 CEN (European Committee for Standardization) TC 251 ENV 13606 Folder: High-level subdivisions of the entire EHR for a patient Composition: A set of record entries relating to one time and place of care delivery; grouped contributions to an aspect of health care activity; composed reports and overviews of clinical progress Headed Section: Sub-divisions used to group entries with a common theme or derived through a common healthcare process. Cluster: Low-level aggregations of elementary entries (Record Items) to represent a compound clinical concept

13 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 13 An example Service Message Ontology Concept Property DD02: Problem DTC12: CarePlan DF03: AllergyState DTH03: Ongoing Problems DTH08: Present Interpretations DD01: Diagnosis DTC08: Diagnostic Test Results DS00: Patient

14 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 14 Semantic Mediation In Artemis architecture, the healthcare institutes can develop their own ontologies However these ontologies are based on standards developed by the healthcare standardization bodies like CEN TC251, ISO TC215, GEHR or HL7 The ontology mappings are achieved through semantic mediation

15 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 15 Mapping Message Ontologies

16 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 16 Semantic Mediation through MAFRA Tool PID patientName id dateOfBirth sex maritialStatus address accountNumber DS00 name Surname patientId sex Date day month year Contact address phoneNo hasContactbirthDate Concept Bridge Property Bridge HL7 CEN ENV 13606

17 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 17 UDDI tModels Relating the Web services with the semantic defined through an ontology - UDDI CategoryBag reference Medical Services PatientReferral Observation Reporting PatientCare PatientReferralReq GetClinicalInfo HacettepeHospital ObservationReportingServices PatientReferralServices getClinicalInfo... UDDI Business Entities and Related

18 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 18 ebXML Classification Hierarchy Associating semantics to Web services in ebXML HealthCareServices PatientCare ObservationReporting PatientAdministration PatientInfoRequest PatientReferralReques t subclassOf serviceQuality Standards Conformed ebXML ClassificationNodes ebXML associations ebXMLslots

19 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 19 How to Define a Classification Hierarchy in ebXML? WebService (seviceQuality) PatientAdministration PatientReferral (stdConformed) …

20 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 20 Relating the services with the semantic defined through an ontology - ebXML MyService PatientReferral serviceQualitystdConformed ServiceToIndustryClassification: Classification RegistryEntry Service classificationNode classsifiedObject Classification Hieararchy

21 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 21 “SubmitObjectRequest” which declares the semantic of “MyService” and relates it with the “PatientReferral” Service HL7

22 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 22 An Example “SubmitObjectRequest” (Cont’d)

23 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 23 We need more: Archetypes for semantic Interoperability Using archetypes is a promising approach in providing semantic interoperability among healthcare systems  Annotating the messages of services with archetypes To realize archetype based interoperability the healthcare systems need to  Discover the existing archetypes based on their semantics  Annotate their archetypes with ontologies  Compose templates from archetypes and retrieve corresponding data from the underlying medical information systems

24 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 24 Exploiting ebXML Registry Semantic Constructs for handling Archetype Metadata ebXML Registry semantic constructs can be used for  Storing Archetype Metadata  Storing Archetypes  Associating archetypes with metadata  Retrieving archetypes by using their semantics

25 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 25 Semantically annotating the archetypes An example Archetype Metadata Ontology Archetype Purpose Referral Research Education Clinical hasPurpose ClinicalDocument CodingSchemeDocumentTemplate ClininalDomain Location Hospital Office Clinic isDocumentedIn SNOMED LOINC hasLinkTo isAPartOf fitsSlotsOf relatedClinicalDomain ClinicalInformation Procedure Plan DiagnosticTests Assessment MedDRAICD10

26 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 26 Representing Archetype Metadata as ebXML Classification Scheme OWL classes can be represented through “ClassicationNodes” RDF properties that are used in OWL can be treated as “Associations” “OWL ObjectProperty", “DataTypeProperty” and “TransitiveProperty” are defined by introduc ing new association types such as “objectProperty”

27 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 27 Representing Archetype Metadata as ebXML Classification Scheme OWL class hierarchies  It is not possible to represent multiple inheritance in ebXML  Define a new association type “subClassOf” Use the predefined “EquivalentTo” association to express  “owl:equivalentClass”, “owl:equivalentProperty” and “owl:sameAs“ A. Dogac, Y. Kabak, G. Laleci, C. Mattocks, F. Najmi, J. Pollock, “Enhancing ebXML Registries to Make them OWL Aware”, Submitted to the Distributed and Parallel Databases Journal, Kluwer Academic Publishers. http://www.srdc.metu.edu.tr/webpage/-publications/2004/ DAPD ebXML-OWL.pdf

28 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 28 Representing Archetype Metadata as ebXML Classification Scheme Archetype Purpose Referral Research Education Clinical hasPurpose ClinicalDocument CodingSchemeDocumentTemplate ClininalDomain Location Hospital Office Clinic isDocumentedIn SNOMED LOINC hasLinkTo isAPartOf fitsSlotsOf relatedClinicalDomain ClinicalInformation Procedure Plan DiagnosticTests Assessment MedDRAICD10 ebXML Registry Classification Hierarchy Archetype SNOMED Radiology Organ System Central Nervous System Clinical Domain Coding Scheme Complete Blood Count Archetype Metadata Ontology

29 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 29 Representing Archetypes in ebXML Registry An “archetype” is represented in the Registry as a “Registry Information Model (RIM) Extrinsic Object”  “Extrinsic Objects” point to the Repository items where their contents are stored OWL definition of an archetype is created from its ADL (Archetype Definition Language) definition and is stored in the Repository

30 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 30 Representing Archetypes in ebXML Registry ebXML Registry Classification Hierarchy Archetype SNOMED Radiology Organ System Central Nervous System Clinical Domain Coding Scheme Complete Blood Count Extrinsic Objects Haemotology Observation Complete Blood Count Brain CT ebXML Repository Archetype OWL Definition URI

31 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 31 Associating archetypes with metadata ebXML Registry Classification Hierarchy Archetype SNOMED Radiology Organ System Central Nervous System Clinical Domain Coding Scheme Complete Blood Count Extrinsic Objects Haemotology Observation Complete Blood Count ebXML Repository Archetype OWL Definition URI Brain CT

32 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 32 ebXML Registry Classification Hierarchy Archetype SNOMED Radiology Organ System Central Nervous System Clinica l Domai n Coding Scheme Complete Blood Count Extrinsic Objects Haemotology Observation Complete Blood Count ebXML Repository Archetype OWL Definition URI Brain CT filterQuery getContentQuery Query Interface

33 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 33 An Example query A user can find all templates and archetypes that make reference to the SNOMED Complete Blood Count term

34 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 34 Filter Query < StringClause stringPredicate = \Equal" > CompleteBloodCount ExtrinsicObjects IDs classied with the “CompleteBloodCount" ClassicationNode Result

35 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 35 Retrieving Archetype Definitions ebXML Registry Classification Hierarchy Archetype SNOMED Radiology Organ System Central Nervous System Clinica l Domai n Coding Scheme Complete Blood Count Extrinsic Objects Haemotology Observation Complete Blood Count ebXML Repository Archetype OWL Definition URI Brain CT

36 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 36 Continuing.. There may be other archetypes classified with  MedDRA - Full Blood Count  Read Codes Full Blood Count These may have been defined to be equivalent to SNOMED Complete Blood Count Term  Through ebXML “EquivalentTo“ association

37 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 37 A Stored Procedure to find Equivalent Class Instances… CREATE PROCEDURE findEquivalentInstances($className) BEGIN SELECT N.value FROM ExtrinsicObject EO, Name_ N WHERE EO.id IN ( SELECT classifiedObject FROM Classification WHERE classificationNode IN ( SELECT id FROM ClassificationNode WHERE id IN ( SELECT parent FROM name_ WHERE value LIKE $className ) UNION SELECT A.targetObject FROM Association A, Name_ N, ClassificationNode C WHERE A.associationType LIKE 'EquivalentTo' AND C.id = N.parent AND N.value LIKE $className AND A.sourceObject = C.id ) ) AND EO.id=N.parent END; GUI sends this stored procedure It becomes possible to automatically obtain the archetype instances that are classified with SNOMED As well as those instances classified with MEdDRA “Full Blood Count" term Read Codes “Full Blood Count” term

38 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 38 An Overview of a Mediator Legacy System CEN/HL7/Gehr Encapsulation Client Interface SuperPeer Services Web Service Enactment HealthCareServices PatientAdministration PatientCarePatientReferralScheduling ObservationReporting PatientInfoRequestCancelPatientReferralPatientReferralRequest InsuranceInformation ClinicalInformationDemographicData GetClinicalInformation Hospital B KlinikBilgiServisi BindingTemp tModel ebXMLUDDI PID id date DS00 name Surname patientId Date day Contact address Concept Bridge Property Bridge Mediator Components Ontology Server - Clinical Concept Ontology - Functional Ontology Semantic Mediator VWS Semantic Mapping via Bridges

39 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 39 Summary: Artemis Architecture GUI based tools for deploying existing healthcare applications as Web services Service functionality ontologies Service message ontologies We are working on archetype based service message ontologies Semantic mediator Semantically enriched Web service registries Semantically enriched P2P Infrastructure for scalability and resource discovery

40 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 40 Artemis Project: References http://www.srdc.metu.edu.tr/artemis/ Dogac, A., Laleci, G., Kirbas S., Kabak Y., Sinir S., Yildiz A. Gurcan, Y., "Artemis: Deploying Semantically Enriched Web Services in the Healthcare Domain", Information Systems Journal (Elsevier), accepted for publication http://www.srdc.metu.edu.tr/webpage/publications/ http://www.srdc.metu.edu.tr/webpage/publications/ Dogac, A., Laleci, G.B., Kabak, Y., Unal, S., Beale, T., Heard, S., Elkin, P., Najmi, F., Mattocks, C., Webber, D., “Exploiting ebXML Registry Semantic Constructs for Handling Archetype Metadata in Healthcare Informatics”, submitted for publication. http://www.srdc.metu.edu.tr/webpage/publications/

41 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 41 If you Google with “web service semantics healthcare”, Artemis project ranks the first If you Google with “web service semantics”, out of 371.000 docs : 1. [PPT] Semantics of Web Services www.srdc.metu.edu.tr/~asuman/ grenoble/_DogacSematicWS_FV.pptSemantics of Web Services 2. [PPT] A Semantic-Based Web Service Composition Facility for ebXML... www.srdc.metu.edu.tr/~asuman/Dogac_ICE_ebXML.pptA Semantic-Based Web Service Composition Facility for ebXML... Finally…

42 Asuman Dogac Nov. 25, 2004 EUROREC Satellite Conference on Ontology, Brussels 42 Thank you for your attention! Questions?

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