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Published byGeorgiana Morrison Modified over 9 years ago
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Reaching data collection strategies on Kappa goniometers Kappa workshop Leiden 2008
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Everything put into context Result of selected orientations Flow of information:
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Everything put into context Input using CCP4 GUI:
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Everything put into context Output:
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Current functionality of preprocessor Algorithm: For every position in collision map – Check if scan allowed – Calculate crystal orientation Select suitable orientations, pass to BEST BEST calculates effect of suggested orientations Oriented on precise collision map sample points Currently time consuming for large collision maps
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Next version: any orientation allowed Orientations between collision map points allowed Algorithm: For each orientation suggested – Calculate rotation – Check allowed scan in collision map Select suitable orientations, pass to BEST BEST calculates effect of suggested orientations Assumes equal step sampling at any value Assumes that if surrounding points give allowed scan, so do intermediate point Need to specify sample step clearly?
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Next actions Decide on future map format – Specify general standard – Equal distances sampling how stated in BioXDM model/collision map Implement and test the latest version on a beamline – ESRF – Maxlab (debugging) Evaluate real data set Implement multiple xtal data set functionality in BEST
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Axis of the Collision Map/Free Scan map Current collision map: Restriction on Omega, Kappa. Phi scans: Interval is given for phi axis: Phi can be F(Full), U(Unavailable) or P(Partially available) ( , ) Phi restriction=[P,F,U] (2D table) Alignment axesscan axis
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Axis of the Collision Map/Free Scan map Suggested updates: Restriction on Omega, Kappa (Phi unrestricted). Omega scans: First choice (feasible?): Interval is given for scan axis (Omega) ( ) [ 1, 2…]*(1D table) Alignment axisscan axis Second choice: ( , ) boolean: available/unavailable(2D table) ( * [ 1, 2…] means two omega intervals free for scan.)
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Axis of the Collision Map/Free Scan map Suggested updates: Restriction on Omega, Kappa (Phi unrestricted). Phi scans: ( ) boolean: available/unavailable(2D table) Alignment axesscan axis Restriction on Omega, Kappa, Phi. Phi scans: ( ) [ 1, 2…](2D table) Or second choice: ( ) boolean: available/unavailable(2D table)
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