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DAVID Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID

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Presentation on theme: "DAVID Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID"— Presentation transcript:

1 DAVID http://david.abcc.ncifcrf.gov/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID http://www.nature.com/nprot/journal/v4/n1/pdf/nprot.2008.211.pdf

2 Access tool from here

3 Upload dataset

4 Dataset1_chicken affy.txt Use test dataset Select Affy ID & gene list

5 Select species

6 Select Gallus gallus as background

7 Results

8 Annotation chart view

9 (http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#summary) What the chart means

10 Save results

11 Results Download Input IDs

12 Results

13

14 What the results mean

15 Downlaod rEsults

16

17 EasyGO BMC Genomics. 2007 Jul 24;8:246. http://bioinformatics.cau.edu.cn/neweasygo/

18 Access the tool

19 Check supported data types

20 Start analysis

21 Use chicken affy dataset 1Choose species Data type Type of test Email notification optional

22 Search status

23 Results Results browse options

24 Flat Form p-value

25 Plain Text

26 Browse results in graph mode Expand immune system process

27 Tree View Color scale is based on p-value

28 User manual

29 Earlier version

30 Supported data types

31 Dataset1_chicken affy.txt will not work as affy IDs are not an option that is available when using earlier version of the tool Only Chicken Gene products accepted


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