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Professor Carole Goble

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Presentation on theme: "Professor Carole Goble"— Presentation transcript:

1 http://www.biocatalogue.org Professor Carole Goble carole.goble@manchester.ac.uk

2 Started June 08 Closed pilot Dec 08 Pilot release April 09 BioCatalogue-Friends focus group Perpetual beta Three year award

3 Influences

4 Curation Model Versioning Quantitative Content Tags Service Model Semantic Content Ontologies Functional Capabilities Provenance Operational Capabilities Operational Metrics Use Policy Social Standing Ratings Usage Statistics Attribution Service Profile Wheel Free text Searching Statistics Usable and Useful Understand able

5 WADL External Descriptions Service Profile Discovery WSDL WSDL2 A.N. Other SAWSDL SA-REST Analytics Sorting Browse/Shop Search Customised Services Workflows Monitoring Profiles Ranking Validating Parse Generate Parse Invoke Searches Comparing Applications REST API

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7 SeekDa! BioMOBY Central DAS Registry Feed Migrate EMBRACE BioSapien myGrid Feed and Cross-link BioLinks Scrap myExperiment Code Base Content for Pilot CASIMIR

8 Discovery Decision Support Reuse (anonymous) Palpability Automated service composition and validation Decision Making Pain Gain Modelling Functional Capability [Lord et al 2004] Phase 1: text + tags Phase 2: + tags sourced from ontologies Phase 3: + full semantic annotation

9 Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed refine validate seed Automated refine validate seed Content Capture and Curation

10 Grounding WSDL Informatics Bioinformatics Molecular Biology Formats Tasks Inputs Outputs Operations Domain Content Service features Task Method Resource Service myGrid Functional Capability Ontology W3C OWL and RDFS Number of classes ~750 myGrid and BioMOBY [Wroe 2003]

11 A toolkit to assist in the cost-effective creation and evolution of reliable semantic annotations Web services. Annotation verification and inference.

12 Users Services Discovery Curation Monitoring Integration registration registration test scripts registration dashboard scavenging tagging wsdl parsing seeded controlled vocab. text search sorting on criteria and categories ownership REST API Open Search myExperiment Identity management account management profile management Wsdl monitoring live tests SOAP services full version management instances 500 services 250 full curated specialist parsers. bookmarkingnotification QoS app feeds browse and drill down recommendations ratings recommendations. tag search usage-based Identity management Content Batch migration Provider engagement Policy identification Pilot REST services Taverna

13 BioCatalogue Team Thomas Laurent Hamish McWilliams Franck Tanoh Jiten Bhagat Carole Goble Rodrigo Lopez Eric Nzuobontane Steve Pettifer Katy Wolstencroft Robert Stevens David De Roure


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