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Published byEllen Mills Modified over 9 years ago
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Clinical Measures Genotype Local Storage BIRN Rack SRB MCAT HID/ XNAT/ LONI DUP Calibration & Analysis Tools GRID Portal Mediator Institution A BIRN Rack SRB MCAT Institution B … Workflow & Control: - Queries (identify subject populations, extract data, etc.) - Statistical Analysis - Download Data for: > Visualization > More Statistics > More Processing - Interoperable Queries (literature, homology, other databases, etc.) Human Data Protection (De-identification Upload Pipeline, DUP) Standardized Acquisition Protocol Institution C BIRN: Informatics Architecture Local DB HID/ XNAT/ LONI
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AHM 2005 Informatics - Project Goals Databasing and Information Management across sites Data and Tool Interoperation Ontology for Data Integration Provenance Enhance Workflow Options Statistical Interface Knowledge Management Semantic Web Functionality Semi-Public & Public Access to Data
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AHM 2005 Informatics - Achievements Since Oct04 DATABASE TECHNOLOGIES Multiple HID’s in operation and with Data (~8 sites) More Clinical Assessments in HID Improved End-to-end Uploading to SRB/HID (in cooperation w/ fBIRN) Multiple XNAT’s in operation with Image, Demographic & Volumetric Data (5 instances/ 3 sites) Provenance Structures Incorporated into XNAT & HID Controlled Release Cycle of Tools (BIRN Release 2.0 6/14/2005)
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AHM 2005 Informatics - Achievements Since Oct04 KNOWLEDGE MANAGEMENT Haystack/Eclipse Semantic Environment PUBLIC DATA Public Data (OASIS & 10/10 UCSD) to be Released (any day now…) UNRELATED ACTIVITIES Red Sox win World Series…
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XNAT Build Report Export Control Browse Drill Down XNAT
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AHM 2005 Informatics - Achievements Since Oct04
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Haystack/Eclipse Workspace
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AHM 2005 Informatics - Discussion Items Continue the expansion of BIRN-compliant Data Information Systems at Multiple Locations Data Interoperation (Multiple instances of pool-able data across cites, within and between management platforms) Increase Availability of Completely Public Data Workflow Ontology
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AHM 2005 Informatics - Oct 2006 Goals To be fleshed out over next two days… More HID and XNAT Sites & Data (UCI & JHU & +++) Inter-site Information Sharing Between Database Systems - MAD ‡ & SASHA datasets as exemplars: ‘Manual’ and ‘Automated’ Mediation Amongst Systems XML Data ‡ Interoperation Between XNAT & HID (w/ fBIRN) Continue Controlled Release Cycle of Tools (BIRN Release 2.1?) - Incorporate XNAT & HID/CALM/GAME Updates mBIRN Public Data Portal 10/10, OASIS (~400) ‡, ADNI (~100), MIRIAD (~300), others Workflow Ontology
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