1. This week in lab: sampled trees in 2 habitats at Green Oaks, ‘Old Growth’ & Spoil Banks - your assignment: 1) Use the supplied data & your lab handout to calculate Shannon-Weiner Diversity Indices & Schoener’s Community Similarity Index 2) Answer the questions on assignment sheet (back of room, or on the course website)

2. Last day… we were discussing the major changes occurring during the history of life, including mass extinctions

3. Luis and Walter Alvarez Included the Cretaceous-Paleogene (K-T) extinction event that wiped out dinosaurs and much more

4. The K-T extinction was not the worst ever… - late in Permian, massive volcanic eruptions causing lava flows, ash, and cooling of climate - extensive glaciation - turn-over of ocean waters brings oxygen depleted water, CO 2 and hydrogen sulfide to surface Extinction of most living species (>90% of marine spp.), and end of Paleozoic era.

5. History of life characterized by great changes in flora and fauna due to extinction & evolution - response to mobile continents & constantly changing climate Fossil record incomplete, but does document many sweeping changes in living things *Required* reading: Chapt. 25, pp. 507-524

6. This long history of life has resulted in an enormous diversity of organisms on the planet - we will try to survey some of this diversity...

7. Traditionally, organisms classified as plants or animals (Kingdoms Plantae & Animalia) - but many species do not fit readily into these categories... - a five kingdom system became popular after 1969

8. - but still does not reflect relationships well, or do justice to diversity of smaller organisms... A three domain system is a starting point for organizing all of these species: Bacteria, Archaea, & Eukarya

9. The first two domains are traditionally grouped as ‘prokaryotes’: - simpler internal structure than eukaryotic cells (no nucleus or other membrane enclosed organelles such as mitochondria)

10. Generally tiny (1-5  m), though some only... tiny

11. Found almost everywhere... - soil, water, in & on other organisms - places too hot or cold or inhospitable for most life - usually do require moisture

12. Most ‘prokaryotes’ are unicellular, a few may be colonial - come in various shapes, especially cocci, bacilli, and spiral forms

13. Normally have a cell wall - protects, maintains shape & prevents bursting in hypotonic conditions Cell walls contain peptidoglycan (sugars linked by peptides) - thick outer layer in gram positive bacteria, thinner layer between membranes in gram negative

14. Some are covered with sticky capsule (polysaccharide or protein) - helps stick to surfaces, protects

15. Some use fimbriae (short, hairlike) to stick to each other or surface

16. May also use pilus (pl. pili) to hold on, or to exchange DNA - horizontal gene transfer

17. About 50% are capable of directional motion, sometimes ‘fast’ - rotation of basal apparatus moves flagella Taxis: movement toward (or away from) chemicals, conspecifics, etc.

18. Lack organelles, but may have membranes from infoldings of plasma membrane

19. ‘Prokaryotes’ have single, circular ‘chromosome’ - few associated proteins May also have smaller DNA rings called plasmids that often carry ‘specialized’ genes (e.g. antibiotic resistance)

20. Reproduction is by binary fission, some can divide every 20 minutes

21. Under unfavourable conditions, some spp. produce endospores - chromosome copied & surrounded by tough wall, water removed, spore can remain dormant for centuries

22. ‘Prokaryotes’ exploit a wider range of resources than all eukaryotes combined

23. ‘Prokaryotes’ may be obligate aerobes (require O 2 for aerobic respiration), facultative anaerobes (use O 2 when available, or fermentation if not) or obligate anaerobes (must use fermentation or anaerobic respiration) All organisms require nitrogen to make proteins, etc., but only certain prokaryotes can fix N 2 to produce ammonia NH 3 (nitrogen fixation)

24. Some ‘prokaryotes’ form colonies, and may show cooperation or specialization - some cyanobacteria have specialized cells for photosynthesis and nitrogen fixation

25. Bacteria that produce dental plaque grow as colony to form resistant coating

26. Discussing ‘prokaryotes’ as if one uniform group, but far from true... - paraphyletic grouping, Archaea closer to eukaryotes than bacteria

27. Bacteria & Archaea share some ancestral traits Archaea & Eukarya share some derived traits Each domain may also show some unique traits

28. Each group also shows great diversity within...

29. Archaea seem to be less abundant, and often found in extreme environments where other organisms cannot live (e.g. thermophiles, halophiles, methanogens), but new types still being found