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Published byJeffry Merritt Modified over 9 years ago
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Classification of Emergency Department CT Imaging Reports using Natural Language Processing and Machine Learning Efsun Sarioglu, Kabir Yadav, Meaghan Smith, Hyeong-Ah Choi This project supported by the NIH National Center for Research Resources (UL1RR031988 and KL2RR031987)
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Background, Objective & Methods Use of electronic medical record data for clinical research and quality improvement requires free-text data interpretation for outcomes of interest. Natural language processing has shown promise for this purpose To demonstrate real-world performance of a hybrid NLP-machine learning system for automated classification of radiology reports
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Approach Overview Multicenter review of consecutive CT reports obtained for facial trauma using a trained reference standard Medical Language Extraction and Encoding (MedLEE) WEKA 3.7.5 Salford Systems CART 6.6
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Results Total reports: 3710 Positive cases: 460 (12.4%) Manual coding had high reliability Kappa=0.97 [95% CI 0.94-0.99]
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CART Decision Trees (50:50) Raw Text (8-node) NLP (9-node)
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Classification Performance Raw Text NLP Precisio n 0.9490.968 Recall 0.9320.964 F-score 0.9400.966 Unexpectedly high performance of machine learning without NLP Comparable to inter- rater performance and prior studies of inter- physician agreement Comparable to prior real-world and simulation studies
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Concluding Remarks How’s it novel? One of only a handful of real-world NLP studies using validated reference standard Translating existing NLP and machine learning technologies to support CER Next step: validation Test approach using other clinical cases Evaluate different features or classification algorithms
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