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Published byConstance Wiggins Modified over 9 years ago
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BGBM IT infrastructure and collection management Anton Güntsch
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BGBM IT infrastructure and collection management BGBM Collections Herbarium: 3.5M Specimens Living Collection: 22000 species Seed bank DNA bank Special collections Digitization rate: ~10% High quality images: ~100000 Hosting: 600000 records from 12 collections
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BGBM IT infrastructure and collection management IT architecture 180 workstations 45 Linux and Microsoft Servers (20 virtualized on VMWare) 2 IBM Bladecenters with 170TB Storage 8-node Linux-Cluster used with 454- Sequencer DBMS: SQL-Server, MySQL, PostgreSQL CMS: Drupal, Wiki: MediaWiki Backups: local storage cluster and archiving facilities of the Freie Universität
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BGBM IT infrastructure and collection management Collection management solutions (1) Accession System for the living collection including seed bank: BoGART (SQL-Server, Access clients) Central Herbarium Management (SQL- Server, Access clients) DNA-Bank (MySQL, PHP client) Rapid data entry form including label printing (EXCEL) Several smaller database applications not yet integrated into the Central Herbarium Management (e.g. Access, Specify)
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BGBM IT infrastructure and collection management Collection management solutions (2) (Almost) all collection databases are equipped with BioCASE/ABCD provider software. Common access to BGBM collections at: http://search.biocase.org/bgbm/
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BGBM IT infrastructure and collection management Main issues faced Interoperability between systems (e.g. herbarium and fruit/seed collection) Annotation workflow Common taxonomic backbone
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BGBM IT infrastructure and collection management Future plans Migrate herbarium database to an existing collection management system Candidates: Specify 6, DiversityCollection, Virtual Herbarium Vienna Testing is underway
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