1. Biological databases Exercises

2. Discovery of distinct sequence databases using ensembl

7. View the genomic context

10. Try some links to other databases

11. HUGO ID genecards

13. REFSEQ

16. Swissprot

17. Try some interesting databases at the NCBI site locus link Pubmed database DDD database

23. ID accessionnumber of a genomic sequence in the nucleotide database

25. ID accessionnumber of a mRNA in the nucleotide database

26. Name of the coding sequence ID of the protein in the protein database (REFSEQ) Crossreferences to the corresponding entry in the nucleotide database and to locuslink Zoom in on a particular gene Location of the gene

27. Reference to protein database

29. Some other interesting sites at ncbi –EST database –UniGENE database –DDD –Microbial genomes database

33. ICES 2006 (updated 01102006) (nieuwe release ensembl)

35. How many microbial genomes have been fully sequenced

37. How many plant species have been fully sequenced

38. Can you find the mammoth sequencing project

40. Search for the genomic map of the Chimp using the genome biology link

43. Check out RefSeq

46. To update the gene database

47. 2 splice variants

48. Redundant database GenBank

53. Ensembl

56. Genomic location

58. Evidence used to annotate

59. Different transcripts

60. Links to related databases