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AtomConfigElectrons H1s 1 1 He1s 2 2 Li1s 2 2s 1 3 Be1s 2 2s 2 4 B1s 2 2s 2 2p 1 5 C1s 2 2s 2 2p 2 6 N1s 2 2s 2 2p 3 7 O1s 2 2s 2 2p 4 8 F1s 2 2s 2 2p 5 9 Ne1s 2 2s 2 2p 6 10 n = 2 n = 1
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Na1s 2 2s 2 2p 6 3s 1 11 Mg1s 2 2s 2 2p 6 3s 2 12 Al1s 2 2s 2 2p 6 3s 2 3p 1 13 Si1s 2 2s 2 2p 6 3s 2 3p 2 14 P1s 2 2s 2 2p 6 3s 2 3p 3 15 S1s 2 2s 2 2p 6 3s 2 3p 4 16 Cl1s 2 2s 2 2p 6 3s 2 3p 5 17 Ar1s 2 2s 2 2p 6 3s 2 3p 6 18 K1s 2 2s 2 2p 6 3s 2 3p 6 3d 0 4s 1 19 Ca1s 2 2s 2 2p 6 3s 2 3p 6 3d 0 4s 2 20 Sc1s 2 2s 2 2p 6 3s 2 3p 6 3d 1 4s 2 21 Ti1s 2 2s 2 2p 6 3s 2 3p 6 3d 2 4s 2 22 V1s 2 2s 2 2p 6 3s 2 3p 6 3d 3 4s 2 23 Cr1s 2 2s 2 2p 6 3s 2 3p 6 3d 5 4s 1 24 Mn1s 2 2s 2 2p 6 3s 2 3p 6 3d 5 4s 2 25 Fe1s 2 2s 2 2p 6 3s 2 3p 6 3d 6 4s 2 26 Co1s 2 2s 2 2p 6 3s 2 3p 6 3d 7 4s 2 27 Ni1s 2 2s 2 2p 6 3s 2 3p 6 3d 8 4s 2 28 Cu1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 1 29 Zn1s 2 2s 2 2p 6 3s 2 3p 6 3d 10 4s 2 30 n = 3
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3d metals (8 First transition series metals constitute the bulk of essential microminerals to life)
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An element in the periodic table characterized by having partially filled d orbitals, created by having the adjoining s orbitals filled before the d. Definition: What is a transition element? Properties: The 3d orbitals are split by ligands resulting in orbitals with higher and lower energy states that supersede the 5 degenerate orbitals. Characterized by Multi-valence states Importance: Resulting complexes take on specific geometrical shapes that relate to binding, color formation, and functionality
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Important Definitions Ligand: (Lat: that which ties) A ligand is a charged or neutral molecule that binds to a metal through either coordinate covalent or ionic bonds. Water is a neutral ligand, CN is a charged ligand. Chelator: (Lat. Claw) A chelator is an organic compound that is capable of wrapping around a metal in multiple bonds thus competing with other molecules (e.g., proteins, nucleic acids) for the metal. Orbital Splitting: A process by which d orbitals are split into high and low energy levels in response to the binding of a ligand. Coordination Number: Referring to the number of ligands that attach Multidentate: ( Lat: dentate, teeth) Referring to a molecule that has multiple binding groups within the same chain capable of forming multiple bonds with the metal ion, e.g., bidentate (2) tridentate (3) etc. Coordinate covalent: A type of bond created when a ligand provides the pair of bonding electrons (Lewis base) to share with the metal.
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Multi-dentate Ligands Oxalate C C O O O O CH 2 -CH 2 NH 2 H2NH2N Co 3+ O O O O C - C Cu 2+ Ethylene diamine CH 2 -CH 2 N N OOC COO Ethylenediamine tetraacetic acid (EDTA)........
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Z Z ZZ Z X X X X X Y YY Y Y d xy d yz d xz d d X 2 -Y 2 Z2Z2 3d orbitals
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Octahedral Complex
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3 of most common complexes with metal ions are: Octahedral (most common) An 8 sided figure featuring 6 ligands, 4 in one plane and two above and below the plane. Square planar A 4 sided figure with 4 ligands all in the same plane Tetrahedral 4 ligands vectorially positioned to have minimum interaction
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FeNi CoMn Cr Transition metals that form octahedral complexes Zn
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Transition metals that form tetrahedral complexes ZnCuCo Transition metals that form square planar and 5-coordination complexes CuZnCu
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Orbital splitting Take Home: By altering the energy state of electrons in a metal ion, ligands are capable of determining valence, reactivity, and even the color of the complex Insights into the properties of ligands
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3d Orbitals dz2dz2 d x 2 -y 2
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Fe forms an octahedral (8 sided figure, six ligands) complex by having its 5, 3d orbitals split into two 2 new orbitals, e g and t 2g. xy xzyzx 2 -y 2 z2z2 z2z2 xyxzyz oo egeg t 2g Octahedral Iron Before splitting After splitting Energy difference
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z2z2 x 2 -y 2 xyxzyz Ti = z2z2 x 2 -y 2 xyxzyz hv Ground state [Ar]4s 2 3d 2 Ti(II) = [Ar]3d 2 Ti(III) = [Ar]3d 1 t 1 2g Excited state e1ge1g Ti(III) Ti 2+ Ti 3+ Ti L L L L L L One 3d
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z2z2 x 2 -y 2 xyxzyz z2z2 x 2 -y 2 xyxzyz Fe o [Ar]4s 2 3d 6 [Fe(H 2 O) 6 ] 2+ t 6 2g Low Spin (Highly energetic) Diamagnetic High Spin (Low energetic) Paramagnetic t 4 2g e 2 g [Fe(CN) 6 ] 4- Fe 2+ [Ar]3d 6 (water as a ligand) CN - as a ligand Ionizes (loses 4s 2 electrons to form Fe 2+ ) Fe(II)
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V [Ar]4s 2 3d 3 Cr [Ar]4s 1 3d 5 Mn [Ar]4s 2 3d 5 High Spin Low Spin No low spin possible V(II) Cr(II) Mn(II)
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Fe [Ar]4s 2 3d 6 Co [Ar]4s 2 3d 7 Ni [Ar]4s 2 3d 8 No low spin possible Fe(II) Co(II) Ni(II)
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Cu [Ar]4s 1 3d 10 Cu [Ar]4s 1 3d 9 Zn [Ar]4s 2 3d 10 Cu(I) Cu(II) No low spin possible Zn(II)
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Class Exercise: Draw the electronic configuration of octahedral [Zn(H 2 O) 6 ] 2+ and predict the color. Zn is [Ar]4s 2 3d 10 Solution z2z2 x 2 -y 2 xyxzyz All orbitals are filled, no color is possible Upon ionization, Zn loses its 2, 4s electrons and becomes 3d 10
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Common Ligands F - FluorideFluoro Cl - ChlorideChloro Br - BromideBromo I - IodideIodo CN - CyanideCyano NCS - IsothiocyanateIsothiocyanato SCN - ThiocyanateThiocyanato OH - HydroxideHydroxo O 2- OxideOxo ONO - NitriteNitro COCarbon monoxideCarbonyl H 2 OWaterAqua NH 3 AmmoniaAmmine Underline indicates atom bonded to metal LigandNameName as ligand
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Ligand Strength and Numbers as a determinant Rule: Ligands differ in the strength of their orbital splitting. The following has been determined experimentally Cl < F - < H 2 O < NH 3 < NO 2 - < CN - < CO Rule: Low spin complexes are created by ligands with strong orbital splitting properties Rule: Octahedral complexes that have 3, 4, 5, or 6 electrons in the t 2g orbital tend to be very stable (inert). All others are labile.
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Biological Relevance
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Myoglobin Heme group O=O Interfere Spherical- 90% -helix
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O 2 binding to Heme Histidine F8 Ferrous (Fe(II) O 2 binds above the ring plane Histidine binds below the plane of the ring Only Fe(II) will bind O 2 C O A linear carbon monoxide can bind with less interference His E7
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COLOR
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garnetaquamarine amethyst ruby topaz kyanite
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Red Blood vs Blue Blood O 2 binding to the heme ring of hemoglobin is coordinated to iron (II). When O 2 is bound to one of the coordinates, Fe(II) is in a low spin (high energy) state and the light emitted is a red. Without O 2 the iron binds water resulting in high spin (low energy) and takes on a bluish color. red blue Hmb 4O 2 red (low spin) Hmb blue (high spin) + 4O 2 Arterial blood Venous blood
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