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What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana.

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Presentation on theme: "What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana."— Presentation transcript:

1 What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN http://www.stolaf.edu/people/hansonr 20 th Biennial Conference on Chemical Education Indiana University July 28, 2008

2 File Reading Quality Scripting Objects Structure Modification Analysis

3 File Reading - Quality - Scripting Zap Crystallographic Symmetry Anisotropic Temp. Factors Trajectory Filter Biomolecules Objects - Structure Modification - Analysis

4 File Reading - Quality - Scripting Zap Crystallographic Symmetry Anisotropic Temp. Factors Trajectory Filter Biomolecules Objects - Structure Modification - Analysis

5 File Reading - Quality - Scripting Hermite Level Sheet Smoothing Antialiasing Calculate Aromatic Font Scaling POVRAY Translucency User-Defined Color Schemes Objects - Structure Modification - Analysis

6 File Reading - Quality - Scripting Hermite Level Sheet Smoothing Antialiasing Calculate Aromatic Font Scaling POVRAY Translucency User-Defined Color Schemes Objects - Structure Modification - Analysis

7 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigate Mode Objects - Structure Modification - Analysis

8 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigate Mode Objects - Structure Modification - Analysis

9 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigation Mode Objects - Structure Modification - Analysis

10 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

11 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

12 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

13 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate/Spin Branch Load Append Minimize Objects - Structure Modification - Analysis

14 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate/Spin Branch Load Append Minimize Objects - Structure Modification - Analysis

15 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate Branch Load Append Minimize Objects - Structure Modification - Analysis

16 File Reading - Quality - Scripting Data GetProperty Jmol Math User-Defined Variables Complex Measuring Write/Print Objects - Structure Modification - Analysis

17

18 File Reading - Quality - Scripting Data GetProperty Jmol Math User-Defined Variables Complex Measuring Write/Print Objects - Structure Modification - Analysis

19 http://chemapps.stolaf.edu/quaternions/PISEMA/pisema.htm

20 http://Jmol.ProteinExplorer.org

21 Thank You!

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