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The GENIUS Portal Nicola Venuti – Livia Torterolo NICE srl Geneva, 10-12.10.2006, 2nd Tutorial for Health e-Child Project New Ideas for Computing Environments.

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Presentation on theme: "The GENIUS Portal Nicola Venuti – Livia Torterolo NICE srl Geneva, 10-12.10.2006, 2nd Tutorial for Health e-Child Project New Ideas for Computing Environments."— Presentation transcript:

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2 The GENIUS Portal Nicola Venuti – Livia Torterolo NICE srl Geneva, 10-12.10.2006, 2nd Tutorial for Health e-Child Project New Ideas for Computing Environments

3 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Contents Grid Portals technology EnginFrame Grid Portal/Gateway GENIUS Portal Future perspectives

4 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 What is a Grid Portal? A Grid Portal is a system to expose grid services that operate on grid resources Services are: –generic as well as application-specific grid services Resources are (stateful) instances of: –jobs, datasets, computing/storage nodes, queues, SW licenses Services are exposed through: –(X)HTML, Portlets, WebServices

5 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Grid Portal Benefits A Grid Portal improves usability of Grids –Verticalizing the service offering –Lowering end-user requirements for accessing the Grid –Hiding the complexity of data management in the Grid A Grid Portal improves utilization of Grids –Making the Grid (r)evolution transparent to the end-user –Providing an appealing user-friendly Web interface –Enforcing Grid utilization policies

6 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 The Web-centric vision Licenses & Data Licenses & Data Grid / Compute Farm Grid / Compute Farm Interactive Apps Interactive Apps Inter/Intranet Server(s) Clients Standard Web Browser

7 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 The Grid Portal / Gateway Interactive Applications Intranet Clients Win LX UXMac Grid / Compute Farm Internal Users Batch Applications Storage and Data Grid Portal / Gateway Project Managers Client Apps Standard protocols Licenses Home Users

8 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Contents Grid Portals technology EnginFrame Grid Portal / Gateway GENIUS Portal Future perspectives

9 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 What is EnginFrame? It is a Web-based technology able to expose Grid services running on Grid infrastructures It allows organizations to provide application-oriented computing and data services to both users (via Web browsers) and applications (via SOAP/WSDL and/or RSS) It’s a Grid gateway It greatly simplifies the development of Web portals

10 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Who uses EnginFrame? Industries –Mechanical: Ferrari, Audi, BMW, FIAT Auto, Delphi, Elasis, Magneti Marelli, P+Z, Swagelok, Toyota, TRW –Manufacturing: Bridgestone, Procter & Gamble, Galileo Avionica –Oil&Gas: Slavneft, Schlumberger, TOTAL, VNIIGaz –Electronics :STMicroelectronics, Accent, SensorDynamics, Motorola –Biotech: ENEA, EGEE LS community –Telecom: Telecom Italia Research –CERN, INFN, ASSC, CCLRC, CILEA, CINECA, CNR, CNRS/IN2P3, ENEA, FzU, ICI, IFAE, ITEP, JSC G.G.M., KU Leuven, SSC-Russia, SDSC Education –Dresda University, Ferrara University, ITU, Messina University, Politecnico of Milan, Technische Universität Dresden, Trinity College Dublin, Salerno University, S-PACI

11 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Grid Infrastructure Customer IT Services Customer Applications Data Grid (AFS, SRB, …) Storage Compute Grid (Platform LSF, Globus, …) Internal HW/SW On-demand HW/SW WSDL/SOAP 3rd party Apps HTTP RSS Clients JSR168 Portlet Containers Skins / Themes Authentication – ACL management Custom XML Application Kits Data Management & Virtualization ISV n - XML Application Kit ISV 1 - XML Application Kit Accounting / Billing GUI Virtualization Single-Sign-On EnginFrame as Grid Gateway End users Presentation engine Portlet GW WS GW RSS GW

12 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Application Server Application Server LSF Compute Farm Client Standard Web Browser MetaFrame + NFuse MetaFrame + NFuse Web+WS Server EnginFrame Server Browsing request HTML Rendering XML Output Service request X / ICA connections EnginFrame Agent EnginFrame Positioning

13 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 EnginFrame Terminology Service – anything that can be submitted through EnginFrame Portal SDF – Service Definition File: XML file which contains the definitions of services Authorization – a system aimed to allow/deny user access to resources based on policies Plug-in – a piece of code that enhances the EnginFrame GRID Portal Spooler – data container created by EF to host the submitted commands

14 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 EnginFrame Characteristics Job scheduling: –Platform LSF, Sun Grid Engine, Altair PBS, LCG and EGEE gLite Easy to add/modify services –Light on programming –Immediate to deploy (self-reload) –Enable to cope with continuous evolution of needs –Enable to deploy project-specific portals Service description, presentation, execution are completely separated! –XML for service description –XSL for service presentation –Service Actions / Shell scripts for service execution

15 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Flexible Input data access Client-side data –HTTP(S) data transfer –Single/multiple upload –Progress bars for large file tracking Server-side data –Standards-based remote navigation –Single-multiple selections –Flexible navigation sources Support for Windows, Linux and UNIX browsers

16 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Usability & Input management User friendly, Application-oriented Job submission Flexible and efficient Input file management Hide complexity of Underlying scheduler

17 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Usability & Input management User friendly, Application-oriented Job submission Flexible and efficient Input file management Hide complexity of Underlying scheduler XML

18 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Monitoring & control Global Job monitoring Cluster & host monitoring Job details & control

19 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Comprehensive Output data management Data lifecycle managemnet Comprehensive output File manipulation (view, edit, delete, zip, …) Job details & control

20 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Spoolers HTML page EnginFrame Working Environment Custom plugin Script Browser SDF XML EnginFrame Server HTML XSLT Grid Compute Farm Grid Compute Farm MetaFrame + NFuse MetaFrame + NFuse Application Server Application Server EnginFrame Agent Execute Service Req XML output Service Req User Authorize Groups, ACLs XML Layout XSL Admin Service Submission

21 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Spoolers HTML page EnginFrame Working Environment Custom plugin Script Browser SDF XML EnginFrame Server HTML XSLT Grid Compute Farm MetaFrame + NFuse MetaFrame + NFuse Application Server Application Server EnginFrame Agent Execute Service Req XML output Service Req User Authorize Groups, ACLs XML Layout XSL Admin

22 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Creating a SDF – example <ef:agent id="myagentname" authority="${EF_DEFAULT_AUTHORITY}“ xmlns:ef="http://www.enginframe.com/2000/EnginFrame"> EnginFrame Grid Portal Welcome to EnginFrame <ef:location host="${EF_AGENT_HOST}" port="${EF_AGENT_PORT}"/> …

23 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Service Structure ef:info ef:option ef:option id type ef:name ef:service id ef:option ef:action id

24 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Services Example gzip sample maximum medium none EF_SPOOLER_NAME="gzip $file” export EF_SPOOLER_NAME ${EF_ROOT}/plugins/lsf/bin/bsub -o output.txt gzip -$level \"$FILE\”

25 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Layout structure: –Left navigation tree with the list of services –Central "content" area with forms and output from services –Top Menu area Customizing the layout - Structure

26 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Spoolers HTML page EnginFrame Working Environment Custom plugin Script Browser SDF XML EnginFrame Server HTML XSLT Grid Compute Farm MetaFrame + NFuse MetaFrame + NFuse Application Server Application Server EnginFrame Agent Execute Service Req XML output Service Req User Authorize Groups, ACLs XML Layout XSL Admin

27 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GridML sample: job andrea default DONE priority /usr/bin/spamc mail $HOME mail 0.0 0

28 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 WebServices gateway EnginFrame as Web Services Gateway Service discoveryService execution Service monitoringData retrieval Presentation layer WS Client

29 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 EF Web Service – Client setting-up process EF WS Interface makes EF services available over HTTP from any SOAP compliant client application Client stubs Client prog. lang. WSDL XML Get WSDL Generate client stubs Client Appl Client prog. lang. Code client Retrieve it from the Web Use client WSs platform tools Code client application logic

30 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Client Reference Implementation Software Bundle It is possible to request the EF Web Services Java Client Reference Implementation from support@enginframe.com The Java Client Reference Implementation software bundle includes –Java stubs classes –Java client layer: client + utility classes –Required Java libraries: Axis, Jakarta-httpclient –Javadoc of the client API –Client examples with sources Implementation for other languages (.NET, Phyton, Perl) are also available Build a layer over the stubs classes in order to provide a higher level application interface to EnginFrame.

31 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Contents Grid Portals technology EnginFrame Grid Portal/Gateway GENIUS Portal Future perspectives

32 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 What is GENIUS? GENIUS is a powerful Grid Portal that allows scientists to exploit Grid resources only using a conventional Web browser It’s a gateway to European EGEE Project’s middle-ware It has been built on top of the EnginFrame framework It allows to expose gLite-enabled applications via Web- browser as well as Web Services

33 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 The GENIUS hourglass model OS & Net services Basic Services High level GRID middleware ALICEATLASCMSLHCb Applications’ specific layer Other apps GLOBUS toolkit EGEE (LCG/gLite) architecture GENIUS web portal GENIUS Grid Enabled web eNvironment for site Independent User job Submission INFN / NICE Collaboration

34 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS Architecture Apache + Tomcat EnginFrame GENIUS https+java/xml+rfb WEB Browser UI Local WS the Grid M/W+GSI 3-tier model

35 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Grid Infrastructure Customer IT Services Customer Applications Data Grid (AFS, SRB, …) Storage Compute Grid (Platform LSF, Globus, …) Internal HW/SW On-demand HW/SW WSDL/SOAP 3rd party Apps HTTP RSS Clients JSR168 Portlet Contaiers Skins / Themes Authentication – ACL management Custom XML Application Kits Data Management & Virtualization ISV n - XML Application Kit ISV 1 - XML Application Kit Accounting / Billing GUI Virtualization Single-Sign-On EnginFrame as Grid Gateway End users Presentation engine Portlet GW WS GW RSS GW

36 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Globus middleware Compute resources EGEE middleware LCG-2 / gLite Local Data Distributed Data WSDL/SOAP 3rd party Apps HTTP RSS Clients JSR168 Portlet Contaiers Classic GENIUS Authentication – ACL management General XML Application Kits Data Management & Virtualization VO n - XML Application Kit VO 1 - XML Application Kit Monitoring & Accounting VNC remote Desktop over SSL MyProxy auth. w/ VOMS extensions GENIUS as Grid Gateway End users Presentation engine Portlet GW WS GW RSS GW

37 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS Grid Portal Reference Web Site: https://genius.ct.infn.it

38 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: security infrastructure All web transactions are executed under the Secure Socket Layer (SSL) via HTTPS The user must have an account on the User Interface When the user wants to interact with the file-system of the UI, he gets prompted for the username and password of the account on that machine Grid authentication in GENIUS is currently based on the concept of user credentials delegation

39 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: files management OS authority Both authorities os and genius are distinct: we have services with differen authority!

40 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: files management Remote File Browser On the User Interface

41 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: files management

42 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: files management Multiple Action in a Single Service View/Edit a File With this service you may edit a file in your home directory. <ef:option id="filetoedit" label="Select File to View/Edit" type="rfb" base="${HOME}" target="@genius"/> $EF_ROOT/plugins/genius/bin/geniusgrid.sh view-file $EF_ROOT/plugins/genius/bin/geniusgrid.sh edit-file

43 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: files management

44 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Grid Authentication with Myproxy myproxy-get-delegation

45 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Grid authentication with MyProxy UI Local WS MyProxy Server GENIUS Server (UI) myproxy-init any grid service myproxy-get-delegation output the Grid execution WEB Browser Now, VOMS Extensions needed to run jobs on the GRID ( --voms )

46 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: security

47 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: preferences

48 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Editor for jdl files

49 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Submission Preferences are on the horinzontal bar after successful login to the Grid (under genius authority)

50 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Submission

51 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Queue Code for Job Queue management rewritten using GridML tags

52 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Queue New Confirmation Message!

53 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Job Queue - Spooler

54 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Data & Grid Catalogs

55 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS: Interactive Tight VNC

56 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS & TRIANA Graphic Workflow Editor

57 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS & TRIANA Graphic Workflow Editor

58 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample Application: PATSearch

59 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample App: PATSearch

60 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample App: PATSearch

61 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample App: PATSearch

62 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample App: PATSearch

63 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Sample App: PATSearch

64 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS3 web portal services for biomed GATE Application GATE is a monte-carlo based radiotherapy planning simulator using GEANT4 Services existing on last GENIUS web portal – GATE simulation submission services: Create GATE files Make JDL files for GATE jobs Submit GATE jobs Provide job status, collection and viewing of results Services added on GENIUS3 web portal – GATE data management services Access and copy data (IM) on the SE Provide and change LFN for files or data Download or delete files/data – Medical images services Medical images: Upload, Anonymize and view Use medical images to define geometry for simulation

65 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Contents Grid Portals technology EnginFrame Grid Portal/Gateway GENIUS Portal Future perspectives

66 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 A-WARE FP6 Funded Project Project goals –Simplify users’ life (focus on problems) way of perceiving the GRID –Fill an existing gap between middleware and portals –common interface to access gLite, Unicore/GS (DEISA project) and GT4 (TeraGrid project) –EnginFrame + A-WARE to be a completely integrated solution An easy Way to Access GRID REsources

67 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 GENIUS Grid Portal for e-Science community: a new experience for managing workflow in a SOA Tools Computational Power Storage and Data Grid Grid Portal / Gateway Web Portal Services (SOA) WS provider SOAP HTML/HTTP submit monitor MOTEUR (Scufl wf enactor ) WSDL TAVERNA (wf editor )

68 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Genius Portal Integration - The Genius Portlet Genius will seamlessly export its services as portlets. Genius as a Portlet builder technology. Genius Portlet will be standard JSR 168 compliant The Genius Portlet Module must be plugged into the JSR 168 compliant Portlet container.

69 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 References EnginFrame Framework http://www.enginframe.comhttp://www.enginframe.com GENIUS Portal https://genius.ct.infn.it (Reference main site)https://genius.ct.infn.it GENIUS Repository at https://geniuscvs.ct.infn.ithttps://geniuscvs.ct.infn.it GENIUS based on gLite at https://glite-tutor.ct.infn.it Coordinator alberto.falzone@nice-italy.comalberto.falzone@nice-italy.com ************************************************************************* GENIUS Installation GENIUS Repository at https://geniuscvs.ct.infn.ithttps://geniuscvs.ct.infn.it Write an email message to alberto.falzone@nice-italy.com for an account request to download the GENIUS packagealberto.falzone@nice-italy.com

70 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Now, access to GENIUS portal and have fun !

71 Geneva, 2nd Tutorial for Health e-Child Project, 10-12.10.2006 Thanks for your attention!Q&A

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