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Dataset Annotation Graphical Notation Entity > Relationship > Characteristic (Standard) > Entity > Entity > Characteristic (Standard) > Key for entity.

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Presentation on theme: "Dataset Annotation Graphical Notation Entity > Relationship > Characteristic (Standard) > Entity > Entity > Characteristic (Standard) > Key for entity."— Presentation transcript:

1 Dataset Annotation Graphical Notation Entity > Relationship > Characteristic (Standard) > Entity > Entity > Characteristic (Standard) > Key for entity Basic Notation Entity > Relationship > Entity > Weak entity & identifying relationship Entity > Distinct observation Entity > Characteristic (Standard) > Partial Key for entity

2 Annotations … 1.PLT-GCED-0409 “Plant community response to fertilization …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.190.7/knb 2.PLT-GCEM-0211b “Plant allometry at GCE sampling sites …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.27.17/knb 3.PLT-GCEM-0511a “Fall 2005 plant monitoring survey -- plant height and shoot status …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.266.6/knb 4.PLT-GCEM-0511b “Fall 2005 plant monitoring survey -- biomass calculated from plant height and shoot status …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.267.16/knb 5.INV-GCEM-0501a1 “Mollusc population abundance monitoring …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.234.6/knb 6.INV-GCEM-0501a2 “Mollusc population size distribution monitoring …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.235.7/knb 7.INV-GCEM-0511 “Fall 2005 crab monitoring: mid-marsh and creek bank abundance …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.265.16/knb 8.INS-GCEM-0511 “Fall 2005 grasshopper monitoring -- mid-marsh grasshopper abundance …” http://knb.ecoinformatics.org/knb/metacat/knb-lter-gce.273.6/knb

3 PLT-GCED-0409.1.1 Plant community response to fertilization at Sapelo Island, Georgia SpatialLocationCommunity Pelletized- FertilizationTreatment ReplicatePlot CentralSubplot Plant Attributes Site Community Treatment Replicate Species_Code ITIS_TSN Plant_Mass Plant_Mass_m2 EntityName (GCESiteNames) EntityType (CommunityTypeNames) EntityType (PelletizedFertilization- TreatmentTypeNames) Within EntityName (Ordinal) Within Area (m^2) = 0.25 EntityType (TaxonomicTypeName) DryWeight (g) Area (m^2) = 1 Length (m) = 1 Width (m) = 1 Length (m) = 0.5 Width (m) = 0.5

4 PLT-GCEM-0211b.2.1 Plant allometry at GCE sampling sites 1 - 10 in October, 2002 SpatialLocationZoneTemporalPoint Plant Attributes Year Month Day Site Zone Species_Code Shoot_Height Flowering_Status Leaf_Count Plant_Mass_m2 EntityName (GCESiteNames) EntityType (ZoneTypeNames) Month (MM_DateTime) Within EntityType (TaxonomicTypeName) DryWeight (g) Year (YYYY_DateTime) Day (DD_DateTime) FloweringStatus (FloweringStatusCodes) PartOf PlantShoot > Height (cm) PartOf LeafPopulation > Count (Number) HasPart

5 PLT-GCEM-0511a.1.0 Fall 2005 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1 - 10 SpatialLocationZoneTemporalPoint Plant Attributes Year Month Day Site Zone Plot Quadrat_Area Species_Code Shoot_Height Flowering_Status Plot_Disturbance EntityName (GCESiteNames) EntityType (ZoneTypeNames) Month (MM_DateTime) Within EntityType (TaxonomicTypeName) Year (YYYY_DateTime) Day (DD_DateTime) FloweringStatus (FloweringStatusCodes) PartOf PlantShoot Height (cm) HasPart ReplicatePlot EntityName (Nominal) Area (m^2) Within PlotDisturbance (PlotDisturbanceCodes)

6 PLT-GCEM-0511b.2.0 Fall 2005 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1 - 10 SpatialLocationZoneTemporalPoint Plant Attributes Year Month Day Site Zone Plot Quadrat_Area Species_Code Shoot_Height Flowering_Status Plot_Disturbance Plant_Biomass EntityName (GCESiteNames) EntityType (ZoneTypeNames) Month (MM_DateTime) Within EntityType (TaxonomicTypeName) Year (YYYY_DateTime) Day (DD_DateTime) FloweringStatus (FloweringStatusCodes) PartOf PlantShoot Height (cm) > HasPart ReplicatePlot EntityName (Nominal) Area (m^2) Within PlotDisturbance (PlotDisturbanceCodes) Biomass (g)

7 INV-GCEM-0501a1.1.0 Mollusc population abundance monitoring: Spring 2003 mid-marsh and creekbank infaunal and epifaunal mollusc abundance based on collections from GCE marsh, monitoring sites 1-10 SpatialLocationZoneTemporalPoint MolluscPopulation Attributes Year Month Day Site Zone Plot Species Mollusc_Count Quadrat_Area Mollusc_Density EntityName (GCESiteNames) EntityType (ZoneTypeNames) Month (MM_DateTime) Within EntityType (PopulationTypeName) Year (YYYY_DateTime) Day (DD_DateTime) ArealDensity (Number/m^2) ReplicatePlot EntityName (Nominal) Area (m^2) Within Count (Number)

8 INV-GCEM-0501a2.1.0 Mollusc population size distribution monitoring: Spring 2003 mid-marsh and creekbank infaunal and epifaunal mollusc size distribution based on collections from GCE marsh, monitoring sites 1-10 SpatialLocationZoneTemporalPoint Mollusc Attributes Year Month Day Site Zone Plot Species Mollusc_Length Condition EntityName (GCESiteNames) EntityType (ZoneTypeNames) Month (MM_DateTime) Within EntityType (TaxonomicTypeName) Year (YYYY_DateTime) Day (DD_DateTime) Length (mm) ReplicatePlot EntityName (Nominal) Area (m^2) Within MolluscShell ShellCondition (ShellConditionCodes) PartOf HasPart

9 INV-GCEM-0511.2.0 Fall 2005 crab population monitoring: mid-marsh and creek bank abundance based on crab hole counts and GCE marsh, monitoring sites 1-9 SpatialLocation > Zone > TemporalPoint > CrabHolePopulation > Attributes Year Month Day Site Zone Plot Quadrat_Area Hole_Count Hole_Density EntityName (GCESiteNames) > EntityType (ZoneTypeNames) > Month (MonthDateTime) > Within > Count (Number) > Year (YearDateTime) > Day (DayDateTime) > ArealDensity (Number/m^2) > ReplicatePlot > EntityName (Nominal) > Area (cm^2) > Within >

10 EntityType (PopulationTypeName) > INS-GCEM-0511.1.0 Fall 2005 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites SpatialLocation > TemporalPoint > GrasshopperPopulation > Attributes Site Year Month Day Transect Species_Code Count EntityName (GCESiteNames) > Month (MonthDateTime) > Within > Count (Number) > Year (YearDateTime) > Day (DayDateTime) > ReplicateBeltTransect > EntityName (Nominal) > Length (m) = 10m > Within > Width (m) = 2m >

11 HYD-GCES-0508a.1.2 Annual summaries of daily observations from the USGS Streamflow Gauging Station on the Altamaha River near Doctortown, Georgia, for 1932 to 2004 Agency > TemporalDuration > Attributes Agency StationID Year Yearly_Num_Daily_Mean_Discharge Yearly_Min_Daily_Mean_Discharge Yearly_Max_Daily_Mean_Discharge Yearly_Sum_Daily_Mean_Discharge Yearly_Mean_Daily_Mean_Discharge Yearly_StdDev_Daily_Mean_Discharge Yearly_SE_Daily_Mean_Discharge EntityName (Nominal) = “USGS” > OperatedBy > Year (YearDateTime) > RiverSection > MinimumDailyMean- Discharge (m^3/s) > StreamflowGuagingStation > EntityName (USGSStationIdentifiers) > AltamahaRiver > MonitoredBy > PartOf > Within > MaximumDailyMean- Discharge (m^3/s) > SumDailyMean- Discharge (m^3/s) > MeanDailyMean- Discharge (m^3/s) > StdDevDailyMean- Discharge (m^3/s) > StdErrDailyMean- Discharge (m^3/s) >

12 WO8802A ( http://www.vcrlter.virginia.edu/data/query/text/datasets/WO8802A.html ) Spartina alterniflora leaf measurements, part A Attributes Month Day Year Site Plot Tag Height Leaves EntityName (Nominal) > SpatialLocation > TemporalPoint > Plant > EntityName (Nominal) > Within > Height (cm) > Day (MMDDYYDateTime) > ReplicatePlot > EntityName (Nominal) > Within > LeafPopulation > Count (Number) > PartOf > HasPart >

13 GCE Ontology Extensions - oboe:Entity - SpatialLocation - USA - Georgia - Eulonia (GCE1) - FourMileIsland (GCE2) - Meridian (GCE4) - FollyRiver (GCE5) - CarrsIsland (GCE7) - AlligatorCreek (GCE8) - RockdedundyIsland (GCE9) - SapeloIsland - DeanCreek (GCE6) - HuntCamp (GCE10) - UGAMarineInstitute (UGAMI) - MarshLanding (ML) - NorthSapelo (GCE3) - Plot - ReplicatePlot - Subplot - CentralSubplot - Transect - ReplicateTransect - ReplicateBeltTransect - ExperimentalTreatment - FertilizationTreatment - PelletizedFertilizationTreatment - NitrogenPelletizedFertilizationTreatment - ControlPelletizedFertilizationTreatment - Zone - CreekBankZone - HighMarshZone - AdditionalJuncusZoneInHighMarsh - Community - BorJunCommunity - SpaBorCommunity - SpaJunCommunity - SpaDisCommunity - SpaSalCommunity - Organism - Plant - Borrichia_frutescens (bushy seaside tansy) - Distichlis_spicata (saltgrass) - Juncus_roemerianus (needlegrass rush) - Salicornia_virginica (Virginia Glasswort) - Spartina_alterniflora (smooth cordgrass) - Spartina_cynosuroides (big cordgrass) - Batis_maritima (turtleweed) - Zizaniopsis_miliacea (giant cutgrass) - Scirpus (bulrush) - Panicum (panicgrass) - Typha (cattail) - Mollusc - Littoraria_irrorata (marsh periwinkle) - Melampus_bidentatus (eastern melampus) - Detracia_floridana (florida melampus) - Geukensia_demissa (ribbed mussel) - Polymesoda_caroliniana (Carolina marshclam) - Gemma_gemma (Amethyst gem clam) - Hydrobiidae (small freshwater snail) - Crab - Grasshopper - Paroxya_clavuliger (salt marsh grasshopper) - Orphulella_pelidna (spotted-winged grasshopper) - Mermiria_intertexta (toothpick grasshopper) - Schistocerca_obscura (obscure bird grasshopper) - Romalea_guttatus (eastern lubber grasshopper) - Orchelimum (greater meadow katydids) - Other_Grasshoppers - PlantPart - Leaf - PlantShoot - Shell - MolluscPart - MolluscShell (also Shell) - CrabHole - Population - CrabHolePopulation - LeafPopulation (also PlantPart) - MolluscPopulation - Littoraria_irrorata_Population - Melampus_bidentatus_Population - Detracia_floridana_Population - Geukensia_demissa_Population - Polymesoda_caroliniana_Population - Gemma_gemma_Population - Hydrobiidae_Population - GrasshopperPopulation - Paroxya_clavuliger_Population - Orphulella_pelidna_Population - Mermiria_intertexta_Population - Schistocerca_obscura_Population - Romalea_guttatus_Population - Orchelimum_Population - Other_Grasshoppers_Population - oboe:Characteristic - oboe:Dimension - unit:Mass - Biomass - DryWeight - unit:Length - Width - FloweringStatus - PlotDisturbance - ShellCondition - oboe:Relationship - Within - HasPart - PartOf - PopulationOf - oboe:MeasurementStandard - oboe:Nominal - CommunityTypeNames - PelletizedFertilizationTreatmentTypeNames - GCESiteNames - TaxonomicTypeNames - ZoneTypeNames - FloweringStatusCodes - PlotDisturbanceCodes - PopulationTypeNames - ShellConditionCodes - oboe:StandardValue - PelletizedFertilizationTreatmentValue - NitrogenPelletizedFertilizationTreatmentValue - ControlPelletizedFertilizationTreatmentValue - GCESiteValue - EuloniaValue - FourMileIslandValue - MeridianValue - FollyRiverValue - CarrsIslandValue - AlligatorCreekValue - RockdedundyIslandValue - DeanCreekValue - HuntCampValue - UGAMarineInstituteValue - MarshLandingValue - NorthSapeloValue - CommunityTypeValue - BorJunValue - SpaBorValue - SpaJunValue - SpaDisValue - SpaSalValue - TaxonomicTypeValue - Borrichia_frutescens_Value - Distichlis_spicata_Value - Juncus_roemerianus_Value - Salicornia_virginica_Value - Spartina_alterniflora_Value - Spartina_cynosuroides_Value - Batis_maritima_Value - Zizaniopsis_miliacea_Value - Scirpus_spp_Value - Panicum_spp_Value - Typha_spp_Value - FloweringStatusValue - NotFloweringValue - FloweringValue - ZoneTypeValue - CreekBankZoneValue - HighMarshZoneValue - AdditionalJuncusZoneInHighMarshValue - PlotDisturbanceValue - PlotDisturbedValue - PlotNotDisturbedValue - PopulationTypeValue - Littoria_irrorata_Population_Value - Melampus_bidentatus_Population_Value - Detracia_floridana_Population_Value - Geukensia_demissa_Population_Value - Polymesoda_caroliniana_Population_Value - Gemma_gemma_Population_Value - Hydrobiidae_Population_Value - Paroxya_clavuliger_Population_Value - Orphulella_pelidna_Population_Value - Mermiria_intertexta_Population_Value - Schistocerca_obscura_Population_Value - Romalea_guttatus_Population_Value - Orchelimum_Population_Value - Other_Grasshoppers_Population_Value - ShellConditionValues - ShellDamagedConditionValue - ShellUndamagedConditionValue

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