1. Project Create an analysis pipeline using Perl to answer a biological question 2 weeks Small teams of ~4 students One report and presention per student

2. Heleen de Weerd Dennis Versluis Berry Kriesels Yanick Hagemeijer Saman Amini Wei Chen Giorgio Tamo Barsha Poudel Mushta Rehman Leila Sharifzadeh Dehkordi Kamlesh Sahu Patricia de Lely Cizar Almalak Tristan de Jong Luigi Faino Dunya Cleijne Dirk van Vugt Jitske van der Laan Joel Klein Tao Xiang Xiaoxue Sun Peter Venhuizen Ioannis Moustakas Robert Ernst Structural Variation RNA Editing Teams

3. Agenda Daily consultation hours: 3pm - 5pm (or questions per mail) Plan presentation: Tuesday February 28 at 3pm presentation: 5-10 min/group, also include task division Progress report: Friday March 2 at 1 pm Final presentation: Friday March 9

4. Schedule 10.30 start (upload presentations etc.) 11.00-12.30 presentations 30 min per group 13.30 start (upload presentations etc.) 14.00-15.30 presentations 30 min per group 16.00-17.30 drinks 30 min per group: 5 min/student + 10 min discussion We will be strict about the time schedule, so make sure to keep your talk to 5 minutes.

5. Report deadline: Monday March 12, 23h59 The INDIVIDUAL final report should be about the COMPLETE project that your group worked on, with emphasis on the part that you contributed. Use a normal publication structure with: introduction, methods, results and discussion sections (include literature references).

6. Each group member will be responsible (‘owner’) of his/her own part of the solution, and that part of the software will be taken into account for the grading (with the final report and presentation).

7. Report You will be graded individually, not as a group: so we should be able to see what you contributed. Include a section at the end of your report that describes everyone’s contribution to the project, who did what. Include the Perl code as an appendix with the author(s) listed.

8. Remember, keep things as simple as possible, there will be no extra credits for unnecessary complexity. And if you have not yet done so, please fill out the: Online survey BIF30806 Advanced Bioinformatics