1. SCI-BUS is supported by the FP7 Capacities Programme under contract no. RI-283481 CloudBroker Platform Tutorial Wibke Sudholt CloudBroker GmbH Technoparkstrasse 1, CH-8005 Zurich, Switzerland Phone: +41 44 633 79 34 Email: wibke.sudholt@cloudbroker.com Web: http://www.cloudbroker.comwibke.sudholt@cloudbroker.comhttp://www.cloudbroker.com

2. © CloudBroker GmbH All rights reserved. Hands-on Tasks Topics: 1.User registration 2.Platform overview 3.Job submission 4.Software deployment Prerequisites: – Computer (own laptop preferred) – Internet access – Web browser (Firefox preferred) – Access to your email / alternatively talk to instructor SCI-BUS Summer School 2012 2 05.07.2012 /

3. © CloudBroker GmbH All rights reserved. User Registration Register your organization and first admin user: – Click on “Register” under https://platform.cloudbroker.comhttps://platform.cloudbroker.com – Fill out the form and accept the terms – Wait for your registration to be activated by the instructor – Check your email inbox for the login link and call it with your web browser / alternatively ask the instructor to call the login link for you and login with your email and password – You should now be logged into the CloudBroker Platform Add further users in your organization, if existing – Click on “Users / New” – Fill out the form – Click on “Save” SCI-BUS Summer School 2012 3 05.07.2012 /

4. © CloudBroker GmbH All rights reserved. Platform Overview Click on all tabs and subtabs in the platform: – “Home”, “Users”, “Software”, “Resources”, “Jobs”, “Invoices”, “Information” Find the uniform elements: – List, detail, new and edit windows – Entry and expert options and costs display – Children – Links – Action menus For a glimpse of the REST web service interface, add “.xml” at the end of the HTML address lines SCI-BUS Summer School 2012 4 05.07.2012 /

5. © CloudBroker GmbH All rights reserved. Job Submission Create a new job: – Click on “Job / New” – Use software “AutoDock 4.2.3” – Use executable “AutoDock 4.2.3 autodock4” – Use 1 node – Use argument string “-p docking.dpf -l log.dlg” Add a data file: – Click on “Actions / + Data file” – Upload input data file package downloaded from https://dl.dropbox.com/u/46831689/inputs.tgz https://dl.dropbox.com/u/46831689/inputs.tgz – Select “Expert Options / Archive” – Save and return to the job Submit the job Watch what happens SCI-BUS Summer School 2012 5 05.07.2012 /

6. © CloudBroker GmbH All rights reserved. Software Deployment Add a new software – Product “AutoDock”, version – Select all under “Expert Options / Allowed instance types” Add two new executables – Binary “autodock4” / “autogrid4” – Select “Produces stderr” – Unselect “Expert Options / Multi-threaded” Add a new installation package – Operating system “Ubuntu 11.10” – Installation directory “/usr/bin” – Upload installation script file downloaded from https://dl.dropbox.com/u/46831689/install_AutoDock_on_Ubuntu.sh https://dl.dropbox.com/u/46831689/install_AutoDock_on_Ubuntu.sh Deploy the software Instructor will show how deployments are generated and the software is activated SCI-BUS Summer School 2012 6 05.07.2012 /

7. SCI-BUS is supported by the FP7 Capacities Programme under contract no. RI-283481 Thank you! Questions? Please sign on the list for the prepayment!