1. Using UNIX Shell Scripts Michael Griffiths Corporate Information and Computing Services The University of Sheffield Email m.griffiths@sheffield.ac.uk

2. Introduction Creating and Executing Shell Script Defining and accessing shell Variables User Input during Shell Script Execution Arithmetical operations on Shell variables Control Structures Defining ad Using Functions Examples References Presentation Outline

3. Introduction What is the shell? Types of shell Why write shell programs?

4. What is the shell? Provides an Interface to the UNIX Operating System It is a command interpreter –Built on top of the kernel –Enables users to run services provided by the UNIX OS A series of commands

5. Types of Shell Bourne Shell (/bin/sh) C Shell (/bin/csh) Korn Shell (/bin/ksh) Bash (Bourne Again Shell) (/bin/ksh) T shell by default (/bin/tcsh) –Used on Titania –Enhanced C shell

6. Shell Differences Bourne shell has fewer interactive features –E.g. no user input C shell –More C like in syntax and structure –Allows user input

7. Why write shell programs? Run tasks customised for different systems Write programs for controlling jobs run an a system Write scripts submitted by a scheduler

8. Creating and Executing a Shell Script Sample.cshrc script Hello world script Job submission script for SGE

9. #!/bin/csh #First execute the titania cshrc script. source /local/shef/cshrc setenv PATH $PATH":/opt/globus/bin" setenv GLOBUS_INSTALL_PATH /opt/globus/bin alias hi 'history' alias max 'ssh maxima.leeds.ac.uk -l wrsmg' alias sftl 'sftp wrsmg@maxima.leeds.ac.uk' alias lsx509 'ls -l /tmp/x509* | grep `whoami`' echo "Welcome to Titania `whoami`" Sample.cshrc Shell Script

10. Hello World Shell Script #!/bin/csh -f # Program 2a. Shell script illustrating the use of # labels and the goto statement. echo "Hello World! " # characters taken literally except $, ` echo "My name is `whoami`" # `` backquotes enclose executable statements goto label1 echo "Before label1" #This line is never reached and is never echoed label1: echo "After label1"

11. Sun Grid Engine Job Submission Script #!/bin/sh #First simple job script for sun grid engine. # #$ -l h_cpu=01:00:00 #$ -m be #$ -M username@shef.ac.uk #$ -cwd benchtest inputfile > msgoutputfile Submits the job benchtest to the sun gridengine queue

12. Shell Script Features Program starts with #!/bin/sh Comment lines start with # –Make code readable by including comments Tell UNIX that a script file is executable –chmod u+x scriptfilename Execute file and get runtime output, i.e. debugging mode –sh –x scriptfilename

13. Commenting Identify who wrote a file and when Identify input variables Make code easy to read Explain complex code sections Version control tracking Future modifications

14. Use of quotation marks ‘ ‘ Single quotes enclosed characters taken literally –ls ‘>file>’ lists the file called >file> “ “ Double quotes enclosed characters taken literally except $ ` (backquote) and \ – echo “$SHELL” the output may be /bin/tcsh ` ` Backquote encloses executable commands –echo “My name is `whoami` “ the output is My name is cs1mkg

15. Define and access shell variables c-shell –set a = hello –set maximum=20 –set b=“hello world” bourne shell –a=hello –b=“hello world” –maximum=20 Display a variable in the bourne and c-shell –echo $a

16. Command line parameters $0 Name of script $1, $2, ….. $n 1 st, 2 nd 3 rd command line parameter $# Number of command line parameters

17. User Input During Shell Script Execution Main problem with bourne shell not very interactive there is no user input! User input with the c-shell uses the special variable $< Example echo "Please enter the name of the job:" set jobname=$< echo "Executing, $jobname"

18. Arithmetical operations c-shell set i1=10 set j1=3 @ k1 = $i1 + $j1 #Note:The space between @ and k1 is important! echo "The sum of $i1 and $j1 is $k1“ Bourne shell # The @ operator does not work for the Bourne shell i1=2 j1=6 k1=`expr $i1 \* $j1` #Using backslash to take * operator literally echo "The multiple of $i1 and $j1 is $k1"