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File 5 MOUSE sequences used in target gene promoter regions to detect NFATc1 protein binding by ChIP.

Published byArchibald Lawrence Wilson Modified over 9 years ago

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Presentation on theme: "File 5 MOUSE sequences used in target gene promoter regions to detect NFATc1 protein binding by ChIP."— Presentation transcript:

1 File 5 MOUSE sequences used in target gene promoter regions to detect NFATc1 protein binding by ChIP

2 ANGPTL2 (324 bp amplicon) UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly ACGTCAGCCTTCAGGGAGTGGAGCAGGCTGGTGAGCCAGGAGCAGAGCTGGCCAGCCTTCCTGTG CCAAAGAAGGAGGGGGCCCCGCCCAGGCCGCCAAAGCAGGCAGGAGGGGCTGGGCCAGCTGGG GCTGGAGCTAGTGTGACATCACCAGGCGGCCCGCCCCTGTCTGGAGCTGAGGGGAGGCCCAGAGC TTTTCTGGGGCCTGGGGGATCCTCTTGCACTGGTGGGCGGAGAGAAGTGCCTGCAGCCAACCAGG GTCAGGCTGTGCTCACAGTTTCCTCTGGCGGCACGTAAAGGCTCCACAAAGGACCTGGGAGTTCAA >chr2:33215795-33216118 FR Forward Primer Reverse Primer

3 ASPN (367 bp amplicon) UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly Forward Primer Reverse Primer GGCTTGATTTGTGCCATTTCTTTGCGGTGGGAACCATAGATGATACTTTTTGACTGGAGAAACTAGA TTTCTGCTAACTCACTAGATACCTTCTGTACCAACTGAGTATTTCCCCTTAGGGTCAATAAACCGCCC GTTCTTACAGGATTCTGTGCTTCAAGGATGTGGGGCTGGGTAATCTCTTGGAGTGGAAAGGGGGA AATGATTTTCTTCTTGAAGAATGGCATCTCTTGAACACTAGTGAGAAGGGAGCTGAGACTCTTGCA GAGGAAAGGTGGAGTTACCTGACTCTGCTTAGTTATCTGTACCACAACAGACGCAGGCCCAGGAA GAGTTTAAAGGGCCTGGCTTGCAGTTCCCAAAGAAG >chr13:49543695-49544061 F R

4 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly Col3A1 (278 bp amplicon) CGGAGAATGGGAGTCAAAACACTTTTTCAAATTCAGACAGTTTTTACTGTTTCAGA GGGAAATTTAAAAACACACAAACAATTGTTGTAGGCTATCACAAAGCACATTCCTAT GTGTTTCTGTCATGCAAATATGTATTTAAGACTAATGCATGTTATAAACATATGCATAG GCTGATGTACACATGCTCCAGATGTGCTGTTTCTGTGTCTGTGGGTTGTGTCCTCTAC ACACAGGGAAAAATATATTAATCATTGCTTTTACTGCTGAGGGGATGG >chr1:45311266-45311543 F R Forward Primer Reverse Primer

5 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly FAP (286 bp amplicon) AGCTGGAGCTCATGGAGGTATTTCCCCAACTGAAGCTCCCTTCTCTGTGATAACTCCAGCC TGTGTCAAGTTGACACACAAAACCAACCAGTACAAACTTGGACTTTAAACCCATCTGATTAT AGAGGCTGAGTACATTACCATTATTGTTTAACATGAAAGCACACTTGTAGTAAAACAATAAC AAATATAAAAACTAGAGCAAGAACCAAACAACACACAACACGTAGAAAAGTTATGCTTCAA AGCATAGATGATAAGAAAAGAAAGAAATCTGAGCTGCTTG Forward Primer Reverse Primer >chr2:62563670-62563955 FR

6 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly MGP (230 bp amplicon) TGATCATGGAAACAGGGAAGACTACTTCGTGGTACTTTGGCTTGTAATAGAGAA CGGGAAAGATGAGGAAGAAGGGGAGAGAGACAGTGAGGAGCGTGAAGGGA AGTCCAAGGTAGGGAGGGAAAACCCACAGACAGCAGGGAGAGAGGTTTCTCA CCGTAGCACAGGGTTGCCACGGCCAGCGCAGCCAGGATGGCCAGAGGGAGCA GGCTCTTCATGGTGTCTCGGGT >chr6:136875513-136875742 F R Forward Primer Reverse Primer

7 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly MRC2 (239 bp amplicon) ACTGGCCACCTGAGTCAGTCGCGCATCCCATCCTTCGGCTGGCCAGGCCTCGCAGCAGCCCAG GCTTCGCCACGCGGTGAAGTTCTGCGGAAAGTTTTGCAGTTGCTTCGCCTCTCGCGCCAGCA GGAGAAGCTGTGACGCAGCGTCTGGGGCTCCAGGCCCGGTCTGAAAAGAGAGGGTAGACAA GGCGGGAAGGAATTAAGAAGCAGAATAGGGGAAGATAAAGAGCGCACACTGGG Forward Primer Reverse Primer >chr11:105292185-105292423 F R

8 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly PTRF (263 bp amplicon) GACTGGGGCAGAGGAATGTGAGCTGCGGAAAGGAATTAGGTCTTCGGAGTGTG CTCTACTCTTTCTCTTTCCTCACCCACAAACCCACTCCAGCCTTTTAAGATCAAGCTG AGGTCCAAATGGCGCGTGAATTGGGTGTAAACGAGTAGTTTGTGTCTATGCCTCAT GTCCTTGGAGGATCCTTGCCCTATACAATCTTTTTCAAAGATTTGGGGGTCTGCCCC CATCGTCTATCTATACACTGAGTTACCACTGTCCCCCAA Forward Primer Reverse Primer >chr11:100970847-100971109 FR

9 UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly TWIST1 (223 bp amplicon) CAGGTCGGTTTTGAATGGTTCGCAGGACGAATTGTTAGACCCCGAGCAAGGGGGGAGGGGG CGAGGGAGGGGGGCTGGAAAGAGGAAACTTTCCTATAAAACTTCGAAAAGTCCCTCCTCCCC ACGTCAGGCCAATGACACCGCTGCCCCCAAACTTTCCGCCCGCACGGAGGTATAAGAGCCGCC AAGTCCACAGCCCGCGCCCAACTCTCAGACACCTCGC Forward Primer Reverse Primer >chr12:33957451-33957673 F R

10 IL2 (249 bp amplicon) UCSC Genome Browser on Mouse Dec 2011 (GRCm38/mm10) Assembly GTCGGGTTAGCCCACACTTAGGTGGCAGTTTTAATTCATACAATGAACGCCTT CTGTATGAAACAAATTTTCCTCTTTGGGGTGGAGACACAAAAGTAACTCATG AAAATGTTCTCTTTGTCAAAACCATCCTGAACCTGTAAGCAGCCTGTTGTGGT GGACAAACGCAAGAGGAGATAGATGAAAAGAATAAATCTTTTAGATTTGTTG ATTAGACAGGAAGGATATTGGTTTCCTGTTTCAAGATGG Forward Primer Reverse Primer >chr3:37126166-37126414 FR

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