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Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator A Comparative Mapping Resource GRAMENE.

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Presentation on theme: "Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator A Comparative Mapping Resource GRAMENE."— Presentation transcript:

1 Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator A Comparative Mapping Resource GRAMENE

2 http://www.gramene.org Rice blast resistance gene Pi-ta Bryan et al. (2000) Plant Cell 12:2033-2046 Mediates gene-for-gene resistance against strains of the fungus Magnaporthe grisea that express avirulent alleles of AVR-Pita 928-aa cytoplasmic receptor with centrally localized nucleotide binding site (NBS) Mapped to centromeric region of rice chromosome 12

3 Are there any putative homologs for Pi-ta in the rice genome that correlate with regions of known resistance?

4 GRAMENE http://www.gramene.org Gramene Literature Page

5 GRAMENE http://www.gramene.org Gramene Protein Page

6 GRAMENE http://www.gramene.org

7 GRAMENE http://www.gramene.org Gramene Protein Page

8 GRAMENE http://www.gramene.org Gramene BLAST Search

9 GRAMENE http://www.gramene.org

10 GRAMENE http://www.gramene.org Tigr_gene Protein Report

11 GRAMENE http://www.gramene.org Tigr_gene Gene Report AC135644

12 GRAMENE http://www.gramene.org Ensembl Genome Browser

13 GRAMENE http://www.gramene.org Gramene QTL Database ~8,000 quantitative trait loci Rice, maize, barley, oat, pearl millet, foxtail millet, wild rice ( Zizania ) Literature curated from 1994-Aug. 2004 Biotic stress

14 GRAMENE http://www.gramene.org QTL Trait Browser Biotic stress

15 GRAMENE http://www.gramene.org QTL Text Search blast*resistance

16 GRAMENE http://www.gramene.org Blast disease resistance (BLRS)

17 GRAMENE http://www.gramene.org CMap Comparative Map Viewer BLRS

18 GRAMENE http://www.gramene.org AC135644 BLRS Xa21 Xa23 Pi18 Pilm2 Pi1

19 GRAMENE http://www.gramene.org Region of disease resistance? Possible cluster of disease resistance genes and QTL at the end of rice chromosome 11 May or may not be the same gene

20 GRAMENE http://www.gramene.org The Gramene Team Susan McCouch Pankaj Jaiswal Junjian Ni Molly Fogleman Noel Yap Lincoln Stein Doreen Ware Chengzhi Liang Ken Clark Kiran Ratnapu Liya Ren Wei Zhao Steve Schmidt Shuly Avraham Will Spooner

21 GRAMENE http://www.gramene.org Gramene PAG Workshops and Posters Workshops : – W183 Intl. Grass Genome Initiative - Genomes And Phenomes, What Do Rice, Maize, Millet And Wheat Have In Common? Monday, January 17, 4:40-6:50pm –Development and Implemention of Ontologies in the Database: An NSF sponsored Training Workshop Monday, January 17, 12:50-3:00pm Posters : – P242 An Update On Gramene QTL Data Module – P254 Gramene Comparative Genome Views: How Can Gramene Leverage Rice For The Other Grasses? – P816 Gramene Diversity Module: Sharing The Data Behind Germplasm, QTL, And Breeding Studies – P870 Gramene: A Comparative Mapping Resource For The Grasses

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