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Figure S2. Amino acid sequence comparison of putative diterpene synthases of P. trichocarpa with characterized diterpene synthases from A. thaliana. Identical.

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Presentation on theme: "Figure S2. Amino acid sequence comparison of putative diterpene synthases of P. trichocarpa with characterized diterpene synthases from A. thaliana. Identical."— Presentation transcript:

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2 Figure S2. Amino acid sequence comparison of putative diterpene synthases of P. trichocarpa with characterized diterpene synthases from A. thaliana. Identical amino acids are marked by black boxes and amino acids with similar side chains are marked by gray boxes. The highly conserved DDxxD and DxxDD motifs are labeled. Amino acids belonging to a conserved N- terminal stretch are labeled by X. AtCPS, (Q38802) copalyl diphposphate synthase; AtKS, (Q9SAK2) kaurene synthase and AtTPS4, (Q93YV0) geranyllinalool synthase of Arabidopsis thaliana.

3 Chromosome 19 110k 20k50k 80k 019G000400019G000600 1890k1920k 1950k 019G016500019G016700019G016900 2610k2640k2670k 019G022900019G023000019G023100 5310k5340k 5370k 019G045100019G045300 5400k 5430k 019G045400 5590k5620k Figure S3. PtTPS genes located on P. trichocarpa chromosome 19. The analysis was performed with the version 3 assembly of the P. trichocarpa genome (www.phytozome.net). Big arrows indicate putative functional monoterpene synthase genes (gray) and sesquiterpene synthase genes (black). Small arrows show TPS gene fragments. Arrow direction is in accordance to gene direction. Black boxes show other non TPS genes.

4 TPS-g TPS-c PtTPS1 PtTPS9 93 PtTPS7 93 NtEAS 58 PtTPS5 69 PtTPS8 PtTPS11 PtTPS14 100 PtTPS4 MsLS PtTPS2 PtTPS6 69 PtTPS12 PtTPS13 100 54 84 63 94 AmMYS PtTPS3 PtTPS15 90 100 Potri.005G210300 Potri.002G052100 100 AtCPS 100 PtTPS10 AtTPS4 100 AtKS Potri.008G082400 Potri.008G082700 100 92 100 0.1 TPS-a TPS-b TPS-e TPS-f Figure S4. Phylogenetic tree of characterized PtTPS enzymes and representive TPS from 6 different TPS subfamilies. The tree was inferred with the neighbor-joining method and n = 1000 replicates for bootstrapping. Bootstrap values are shown next to each node. NtEAS (Q40577), Nicotiana tabacum 5-epi-aristolochene synthase; AtCPS, (Q38802) copalyl diphposphate synthase; AtKS, (Q9SAK2) kaurene synthase and AtTPS4, (Q93YV0) geranyllinalool synthase of Arabidopsis thaliana; MsLS, Mentha spicata (AAC37366) (4S)-limonene synthase; AmMYS, Antirrhinum majus (AAO41727) myrcene synthase

5 Figure S5. Amino acid sequence comparison of the characterized poplar mono- and sesquiterpene synthases. Identical amino acids are marked by black boxes and amino acids with similar side chains are marked by gray boxes. Conserved motifs are labeled.

6 40 80 120 160 Relative abundance (TIC x 10,000 ions) Relative abundance (TIC x 10,000 ions) 161718 10 20 30 Retention time (min) 3 1 2 4 5 161718 Retention time (min) 3 1 2 4 injector temperature 230°C injector temperature 150°C PtTPS11 0 4 8 12 16 151617181920 5 1 6 7 cont. 8 9 151617181920 0 10 20 30 40 1 6 7 cont. 8 Retention time (min) Relative abundance (TIC x 10,000 ions) Relative abundance (TIC x 10,000 ions) PtTPS7 Figure S6. GC-MS analysis of PtTPS7 and PtTPS11 products. The enzymes were expressed in E. coli, extracted, partially purified, and incubated with the substrate FPP. Products were collected with a solid-phase microextraction (SPME) fiber and analyzed by GC-MS with different injection temperatures to visualize heat induced rearrangements. 1, β-elemene; 2, eremophilene; 3, α- selinene; 4, unidentified sesquiterpene; 5, germacrene A; 6, (E)-β-caryopyhyllene; 7, α-humulene; 8, elemol; 9, hedycaryol.

7 1820222426 3 6 9 6 12 18 20 40 60 10 20 30 1820222426 1820222426 1820222426 Retention time (min) Relative abundance (TIC x 10.000) (+) (-) (±)-caryophyllene (-)-caryophyllene PtTPS9 product P. trichocarpa volatiles 46474849 46474849 46474849 40 80 120 40 80 120 40 80 120 Relative abundance (TIC x10.000) (+)-nerolidol (±)-nerolidol (-)-(3R) (+)-(3S) PtTPS15 sesqui- terpene products 222324 20 40 60 (±)-linalool (-)-(3R) (+)-(3S) 222324 20 40 60 PtTPS15 mono- terpene products (+)-(3S) Relative abundance (TIC x10.000) Retention time (min) 222324 20 40 60 (-)-(3R) (-)-linalool Retention time (min) 20222426 15 30 45 60 10 20 30 40 20222426 2 4 6 8 10 20222426 Retention time (min) Relative abundance (TIC x 10.000) PtTPS12 mono- terpene product (-)-linalool (±)-linalool (-)-(3R) (+)-(3S) (+)-(3S)- linalool (-)-(3R) (-)-(3R)-linalool 1 2 3 4 14.515.516.517.518.5 15 30 45 60 14.515.516.517.518.5 Retention time (min) (±)-β-elemene (-)-β-elemene (-) (+) Relative abundance (TIC x 10.000) Time--> 14.515.516.517.518.5 1 2 3 4 (-)-β-elemene PtTPS11 sesqui- terpene products A B C DE Figure S7. Chiral analysis of PtTPS enzyme products and poplar volatiles. The recombinant enzymes were incubated with the substrate GPP and FPP. Enzyme products and volatile collections from herbivore-induced poplar leaves were run on a chiral column and analyzed by GC- MS. Retention times and spectra were compared to those of the pure standards and standard mixtures shown.

8 apical herbivory 1 2 3 5 4 6 8 7 9 10 basal herbivorycontrol 1 2 3 5 4 6 8 7 9 10 1 2 3 5 4 6 8 7 9 Figure S8. Experimental set up. Herbivory was applied to a single leaf of intact trees either apically (LPI3), basally (LPI10), or not at all (control). Volatiles of eight single leaves (LPI3 to LPI10) were individually measured from all trees.

9 15.0017.0019.0021.00 0 100 200 300 (Z)-farnesol (Z,Z)-farnesal (E)-farnesol (E,E)-farnesal empty vector control + FPP 5.007.009.0011.0013.00 0 500 1000 empty vector control + GPP Relative abundance (TIC x 1,000 ions) nerol neral geraniol geranial Retention time (min) Relative abundance (TIC x 10,000 ions) Relative abundance (TIC x 1,000 ions) empty vector control + GGPP Figure S9. GC-MS analysis of protein extracts from E. coli expressing an empty vector. The empty vector was expressed in E. coli and the raw protein extract was incubated with GPP, FPP and GGPP, respectively. Products were collected with a solid-phase microextraction (SPME) fiber and analyzed by GC-MS. Substrate hydrolysis products are labeled, peaks not labeled are non-terpenoide contaminations.


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