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Published byNancy Perry Modified over 9 years ago
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Study 38.2: Experimental Design and Summary
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Study 38.2: Experimental Design Day 0 7B2-AAA I.V. infusion 50 mg/kg Day -6 Pre-bleed and rectal biopsies 12 h Rectal biopsies 52 h 7B2-AAA I.V. infusion 50 mg/kg 60 h Rectal biopsies
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Study 38.2: Details Monkey IDs: 5105, 5100, 5109, 5104 All monkeys SIV-negative and non-immunized prior to study Intravenous infusion of 7B2-AAA, a non- neutralizing mAb against the gp41 immunodominant epitope; 50 mg/kg 2X at 0 and 52 hours. Timing was determined based on a previous pharmacokinetic study. Rectal biopsies obtained pre and then 8 or 12 hours post each infusion. RNA was isolated from the rectal mucosa for microarray analysis.
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Study 38.2: Objectives Global microarray analysis to determine differential expression patterns following the infusion of 7B2-AAA. We are looking for the upregulation/downregulation of any genes of interest—no underlying hypothesis.
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Cytokine kinetics from rectal wecks taken in NHP 38.2
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CytokinePlasmaRectal Weck G-CSF GM-CSF IFNg IL-10 IL-12/23(p40)X IL-13 IL-15X IL-17 IL-18XX IL-1bXX IL-1raXX IL-2 IL-4 IL-5 IL-6 IL-8XX MCP-1XX MIP-1a MIP-1b TGFaXX TNFa VEGF sCD40LX 7B2 NHP PK study Cytokine Elevations
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IL-1b Kinetics in Rectal Wecks
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IL-18 Kinetics in Rectal Wecks
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IL-1ra Kinetics in Rectal Wecks
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IL-8 Kinetics in Rectal Wecks
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TGFa Kinetics in Rectal Wecks
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MCP-1 Kinetics in Rectal Wecks
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Quality Control of Arrays No Sample outliers found. Distributions of expression values consistent
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Exploratory Analysis Unsupervised analysis results in Samples grouping by Donor. Will provide a report (Part B), with analysis blocked by donor.
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Differentical Gene Expresion Hour 60 most DEG, h12 looks more like preInfusion. h60 vs pre on the left, F test on right
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Gene Set Enrichment analysis h12 vs preInfusion h12, TGF-beta, IL-22 pathways. 39 pathways enriched, non meet significance.
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Gene Set Encichment h60 vs Preinfustion 120 pathways enriched; predominantly signally pathways responding, top genes presented here. Please see table in report. Many cytokine and Chemokines have beeen affected. 3 pathways meet significance. Will see if this signal gets clearer with Analysis part B, bloc by donor
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