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DNA Microarray Experiment

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Presentation on theme: "DNA Microarray Experiment"— Presentation transcript:

1 DNA Microarray Experiment
See Microarray Animation

2 Cyber Tools for Undergraduate Education
GCAT: Network of faculty collaborating to bring cyber tools into undergraduate classrooms Students from across the U.S. sharing data Shared resources to make microarray experiments affordable Clearing house of information for students and teachers Database of results for teaching and research

3 How Does GCAT Work? Collects requests for DNA chips; currently 7 species available Obtains microarrays from academic suppliers Distributes chips to faculty teaching undergraduates Undergraduates conduct experiments Chips are sent to GCAT to scan (NSF-funded scanners) FTP data to students for analysis (< 24 hours) Students and faculty share data

4 GCAT Resources Protocols and FAQs Data sets Free Software Listserv
Workshops 7 Species and growing Experienced faculty for technical support Community of faculty for moral support See Microarray Animation

5 Free Software and Math Tools
Online Clustering Activity gcat.davidson.edu/bioinformatics/clustering/jas/clustering.htm Diauxic Shift Data Analysis gcat.davidson.edu/GCAT/workshop2/derisi_lab.html Correlation Calculations Activity gcat.davidson.edu/Online_Genomics/Online.html#r

6 Participating GCAT Schools
3 Countries (US, Canada and Australia) 100 Faculty at 90 US Institutions 2800 Undergraduates


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