1. Rubber Hits the Road: How RDF benefits NEMO
Paea LePendu
Stanford Center for Biomedical Informatics Research
National Center for Biomedical Ontology (NCBO)
Stanford University
February 26, 2010
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

2. Linked Open Data (http://linkeddata.org/)
BioPortal
NIF
NEMO
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

3. Web of Knowledge (http://www. iskouk
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

4. Web of Knowledge (http://www. iskouk
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

5. Who is Eric Miller. Resource Description Framework (RDF) (http://en
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

6. Annotation at NCBO Resource Index Data is a publication or article
PubMed, PubChem, ClinicalTrials, Gene Expression Omnibus, DrugBank, etc.
Data is a publication or article
Resource is a supplier of data
Index associates data to ontology terms
20 resources (going on 100)
Over 5 BILLION annotations!
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

7. Annotation Tagged Datasets Search & Retrieval Mining: Co-occurrences
Cross-correlations
Frequent items
Tag clouds
Minimal inference
P100
N100
LOCC
ROCC
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

8. Deep Annotation Tagged records within datasets NEMO is novel!
Rich semantics
Detailed queries (SPARQL)
Aggregations
Fine-grained analysis
NEMO is novel!
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

9. NEMO Annotation Task Force (http://nemo. nic. uoregon
Key Personnel:
Haishan Liu, Bob Frank, Jason Sydes
Gwen Frishkoff & Dejing Dou
Goals (3 phases):
Prototyping Annotations
Finessing Annotations and Ontology Mappings
Databasing the Annotations (RDF)
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

10. Thank you.
Questions?
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.