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Geospatial web services applied to Biodiversity Modelling Karla Donato Fook Advisors: Dr. Antônio Miguel V. Monteiro Dr. Gilberto Câmara Collaboration:

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Presentation on theme: "Geospatial web services applied to Biodiversity Modelling Karla Donato Fook Advisors: Dr. Antônio Miguel V. Monteiro Dr. Gilberto Câmara Collaboration:"— Presentation transcript:

1 Geospatial web services applied to Biodiversity Modelling Karla Donato Fook Advisors: Dr. Antônio Miguel V. Monteiro Dr. Gilberto Câmara Collaboration: Dr. Silvana Amaral

2 Biodiversity

3 Species Distribution Modelling Experiment

4 Environmental recovery Contaminated area – before and after recovery work in 2001 Companhia Mineira de Metais (CMM) Três Marias-MG Source: http://cienciahoje.uol.com.br/ controlPanel/materia/view/2419

5 Species conservation Source: Ibama Callicebus Coimbrai & Callicebus barbarabrownae

6 Impacts of climate change Source: http://cedoc.ensp.fiocruz.brhttp://cedoc.ensp.fiocruz.br www.multirio.rj.gov.br / www.meioambiente.uerj.brwww.multirio.rj.gov.br

7 Expansion of invasive species Source: USDA – United States Department of Agriculture / http://www.glerl.noaa.gov/res/projects/multi_stressors/graphics/invasive.jpg

8 Web Biodiversity Collaborative Modelling Services Pelargonium Cordifolium Callicebus Coimbrai & Callicebus barbarabrownae WBCMS Web Biodiversity Collaborative Modelling Services

9 General Objective Support collaboration in a Species Distribution Modelling Network: Sharing modelling

10 Provide answers What species are being modelled? Where does the data come from? What are the environmental variables? What are the algorithms? If I have a question, how can I look for similar results?

11 Key Concept Model Instance Species Distribution Modelling

12 Model Instance Species Model

13 Model Instance Species Model Metadata +

14 Model Instance Occurrence Environmental Variables Algorithm Model Instance Species Model generation Absence Metadata + Data

15 Model Instance Occurrence Environmental Variables Algorithm Model Instance Species Model generation Absence Metadata + + + + Data

16 Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Model Instance Species Model generation Absence Reports Results Metadata + + + + Data

17 Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Metadata + Model Instance Species Model generation Absence Reports Results Metadata + + + + Data

18 Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Metadata + + Model Instance Species Model generation Absence Reports Results Metadata + + + + Data

19 WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

20 XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

21 Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

22 Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

23 Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

24 Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

25 WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

26 Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

27 Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

28 Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

29 Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

30 WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

31 Model Processor Request Species distribution map Client Application Model instance Repository OpenModeller Web Service WBCMS Server ModelProcessor RunModel Legend: Application WBCMS component External WS

32 Model Processor Request Species distribution map Client Application Model instance Repository OpenModeller Web Service WBCMS Server ModelProcessor RunModel Legend: Application WBCMS component External WS

33 WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

34 WBCMS Architecture Web Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor Client Applications

35 WBCMS Prototype OpenModeller Project

36 Catalogue Client Application OpenModeller modelling result status msg Model Instances WBCMSWBCMS Model Instance Web Services Biodiversity Data Researcher

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38 Access Client Application Model Instance Query Reaearcher WBCMSWBCMS Model Instances

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48 Species Distribution Maps

49 Final Comments  The conceptual framework of web services supplies a base for development of collaborative environment for species distribution modelling  WBCMS architecture Allows sharing experiments in a species distribution network Enables researchers to perform new models based in previous ones Allows comparing results  Our experiments, have demonstrated the viability of the proposals and ideas

50 Final Comments  Future Work Model instances usage statistics Link to related publications Make WBCMS available

51 Lençóis Maranhenses Thanks ! karla@dpi.inpe.br


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