1. Fig 8.19 Homework #2 is due 10/18 Bonus #1 is due 10/25 Weekly quiz online each Thursday, due each Tuesday

2. Fig 16.1 Gene Expression is controlled at all of these steps: DNA packaging Transcription RNA processing and transport RNA degradation Translation Post-translational

3. C. elegans is commonly used to study development

4. C. elegans development

5. C. elegans mutants with cells that do not develop properly. Fig 12.25 and

6. C. elegans mutants with cells that do not develop properly. The product of these genes was found to be RNA?

7. Cell vol. 116, 281-297 2004 MicroRNAs (miRNA) are ~22nt RNAs that play important regulatory roles

8. How do microRNAs control gene expression? miRNA expressed miRNA processed to ~22nt RNA Mature miRNA

9. A processed mRNA ready for translation: microRNAs inhibit translation by binding to the 3’ end of mRNA microRNA bind to 3’-UTR 5’-UTR 3’-UTR

10. miRNA expressed miRNA processed to ~22nt RNA Mature miRNA the 3’ end with attached microRNA interacts with the 5’ end, blocking translation

11. miRNAs can lead to methylation of DNA that leads to inhibition of transcription

12. microRNAs primarily target gene products that function during development Tbl 1

13. PNAS vol. 101 #1 pg 360-365, 2004 tissue specific expression of mouse microRNA

14. Silencing RNAs (siRNA) are artificially induced dsRNA Fig 8.22

15. siRNA with exact matches to the target mRNA causes degradation of the mRNA Fig 8.21

16. microRNAsiRNA Translation inhibited mRNA degraded

17. Fig 16.1 Gene Expression is controlled at all of these steps: DNA packaging Transcription RNA processing and transport RNA degradation Translation Post-translational

18. Phosphorylation and dephosphorylation of proteins can change activity Fig 9.21

19. Ubiquitinization targets proteins for degradation Fig 9.23

20. All protein interactions in an organism compose the interactome

21. Some proteins function in the cytoplasm; others need to be transported to various organelles.

22. How can proteins be delivered to their appropriate destinations?

23. Protein Destinations: secretion or membrane

24. Signal sequences target proteins for secretion Fig 9.24

25. Translation of secreted proteins

26. Translation of membrane bound proteins

27. Translation of secreted or membrane bound proteins This step determines secretion or membrane bound.

28. Protein Destinations: nucleus Signal anywhere in protein, Translation in cytoplasm, Signal not removed

29. Protein Destinations: mitochondria or chloroplast Signal translated first, Translation in cytoplasm, Signal removed

30. Protein Destinations: signals in protein determine destination

31. Development: differentiating cells to become an organism

33. Cells function differently because they express different genes.

34. The proper control of gene expression is critical for proper development.

35. So development in animals is one way.

36. Inverse relationship between smoking and weight: more smoking : less weight

37. Effect of smoking on fetal development and how that can affect adults

38. Adults exposed to smoke as fetuses have higher risk of obesity and heart disease

39. What is the connection?

40. Obesity, Diabetes, Heart Disease, High Blood Pressure, Some Cancers all may have some origins during fetal development.

41. Adults metabolism may react to poor nutrition as fetuses… Adaptation of Thriftiness or Catch Up Growth.

42. Adults metabolism may react to poor nutrition as fetuses…Adaptation of Thriftiness or Catch Up Growth. Study of babies born during Dutch famine of 1944-45…

43. Adults metabolism may react to poor nutrition as fetuses…Adaptation of Thriftiness or Catch Up Growth. Study of babies born during Dutch famine of 1944-45… 20 years later found that these babies had higher rates of obesity.

44. Adults metabolism may react to poor nutrition as fetuses…Adaptation of Thriftiness or Catch Up Growth. Study of babies born during Dutch famine of 1944-45… 20 years later found that these babies had higher rates of obesity. Precise mechanism is not known

45. What about smoking? 17,000 births studied and checked at age 16 and 33. Fetuses exposed to smoking had increased rate of obesity.

46. What about smoking? 17,000 births studied and checked at age 16 and 33. Fetuses exposed to smoking had increased rate of obesity and more smoking meant more obesity.

47. What about smoking? 17,000 births studied and checked at age 16 and 33. Fetuses exposed to smoking had increased rate of obesity and more smoking meant more obesity. For Mom’s who abstained during pregnancy, no effect on fetus or as adult.

48. What about smoking? 17,000 births studied and checked at age 16 and 33. Fetuses exposed to smoking had increased rate of obesity and more smoking meant more obesity. Smoking during first trimester had same effect as during whole pregnancy.

49. What about smoking? For diabetes more than 10 cigarettes per day gave a 4 times greater risk of diabetes.

50. What about smoking? Risk of high blood pressure also increases with increased exposure to fetus of smoking during pregnancy

51. Why?

52. Nicotine can inhibit hunger and increase energy expenditure. This can lead to poor fetal nutrition.

53. Why? Nicotine causes constriction of blood vessels, and may limit blood flow to the fetus.

54. AAL 38.8 Mammalian circulation

55. Nicotine causes blood vessels to constrict

56. Why? CO in blood decreases delivery of O 2 to fetus.

57. Why? These are all indirect affects… Nicotine can inhibit hunger and increase energy expenditure. Nicotine causes constriction of blood vessels, and may limit blood flow to the fetus. CO in blood decreases delivery of O 2 to fetus.

58. Why? Nicotine and other toxins in smoke may directly affect hormones that direct fetal development.

59. Hormones are molecules produced in one cell and signal another.

60. Why? Nicotine and other toxins in smoke may directly affect hormones that direct fetal development. Including hormones that direct brain development.

61. So, Smoking during pregnancy may have indirect and/or direct affects on fetal development, and these affects may manifest themselves in adults.

62. Correlation of weight (BMI)% Biological siblings34 Parents and children living together26 Identical twins reared together80 Fraternal twins reared together43 Identical twins reared apart72 Adopted children and parents 4 Unrelated children living together 1 Correlation of weight and relatedness

63. Nature and Nurture: Are traits coded for by genes fixed while traits coded for by the environment are under our control?

64. Fig 8.19 Homework #2 is due 10/18 Bonus #1 is due 10/25 Weekly quiz online each Thursday, due each Tuesday