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Pti.iu.edu/sc14 The National Center for Genome Analysis Support Supercomputing 2014 November 17-21, 2014.

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Presentation on theme: "Pti.iu.edu/sc14 The National Center for Genome Analysis Support Supercomputing 2014 November 17-21, 2014."— Presentation transcript:

1 pti.iu.edu/sc14 The National Center for Genome Analysis Support Supercomputing 2014 November 17-21, 2014

2 pti.iu.edu/sc14 Who We Are Indiana University Carrie Ganote – Bioinformatics Analyst Le-Shin Wu - PhD Computer Scientist Tom Doak – PhD Genomicist and Biology Liason Bill Barnett – Director Also Staff at Texas Advanced Computing Center, Pittsburgh Supercomputing Center, and the San Diego Supercomputer Center.

3 pti.iu.edu/sc14 NCGAS Partners

4 pti.iu.edu/sc14 NSF Funded Genomics Projects and Project startups. National Cancer Institute Funded Investigators and Others Pursuing Transcriptomics Research Members of the IU Life Sciences Research Community NCGAS Audience

5 pti.iu.edu/sc14 NCGAS Consulting Services linux $ Help! home -- bash Bioinformatics should be available to anyone, regardless of their background in informatics or computer related fields. We help with the following: Analysis and interpretation of results Learning to use UNIX Tools of the trade Best practices Experimental design Software installation Troubleshooting Letters of commitment for grant proposals

6 pti.iu.edu/sc14 Project storage on IU’s Data Capacitor 2 Long term storage for up to 50 terabytes on IU's Scholarly Data Archive. Publication of data sets and final results in the IU ScholarWorks Internet2 backbone for fast data transfer NCGAS Data Services

7 pti.iu.edu/sc14 Online training tools at ncgas.org Annual Galaxy and Trinity workshops Outreach at genomics and computational biology conferences NCGAS Training and Outreach

8 pti.iu.edu/sc14 Making IT easier for Biologists Web interface to NCGAS resources Supports many bioinformatics tools Available for both research and instruction.

9 pti.iu.edu/sc14 82 Projects supported, representing more than $61M in research. 51 Training and outreach events, serving 691 people in the last year alone. 4.4 out of 5 in user satisfaction. PTI Technical Report PTI-TR14-005 (http://hdl.handle.net/2022/18513)http://hdl.handle.net/2022/18513 NCGAS Productivity

10 pti.iu.edu/sc14 Host-endosymbiont relationships between filarial nematode and Wolbachia NCGAS-Supported Science

11 pti.iu.edu/sc14 Study of complete RNA collection of fruit fly uncovers unprecedented complexity NCGAS-Supported Science

12 pti.iu.edu/sc14 North Atlantic Fisheries Decline: Zooplankton transcriptomes NCGAS-Supported Science


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