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Issues in developing NDAR autism ontology Samson Tu Stanford Center for Biomedical Informatics Research 2007-11-19 conference call.

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Presentation on theme: "Issues in developing NDAR autism ontology Samson Tu Stanford Center for Biomedical Informatics Research 2007-11-19 conference call."— Presentation transcript:

1 Issues in developing NDAR autism ontology Samson Tu Stanford Center for Biomedical Informatics Research 2007-11-19 conference call

2 Strategies for extending BIRLEX ontology Define concepts derived from literature DSM-IV concepts (capabilities) Hus 2007 concepts (phenotypes) Model assessment results NDAR codebook Relate concepts to assessment results using OWL DL or SWRL rules

3 Model CodeBook as assessment result

4

5 Issues in using BIRNLex Versions and inconsistencies Clarification of concepts Phenotype under _birnlex limbo class Phenotype/behavior/developmental capability/, assessment/assessed results/assessment instrument Distinction between generically and specifically-dependent classes Need for community input

6 BIRN Mediator issues Current definitions written in OWL DL or SWRL Develop user-level tools Translation to BIRN Mediator? Need BIRN Mediator query language Need to understand how ontology is used Low repetitive sensory motor activity adi_2003((?a) ∧ dbaes_unsensfailC4(?a, ?rsma1) ∧ cbaes_unsensfailC4(?a, ?rsma2) ∧ intbehav_cunsens(?a, ?rsma3) ∧ intbehav_eunsens(?a, ?rsma4) ∧ intbehav_cabinr(?a, ?rsma5) ∧ intbehav_eabinr(?a, ?rsma6) ∧ swrlb:add(?sum, ?rsma1, ?rsma2, ?rsma3, ?rsma4, ?rsma5, ?rsma6) ∧ swrlb:lessThanOrEqual(?sum, 4) → LRSMA(?a)


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