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Published byKristin Barber Modified over 9 years ago
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1- Making Density Gradients Pre-formed discontinuous gradients Pre-formed continuous gradients Self-generated gradients 2- Density Gradient Harvesting
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Discontinuous gradient by overlayering B A C
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Discontinuous gradient by underlayering C A B D
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top bottom density Diffusion of a discontinuous gradient
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Rapid formation of continuous from discontinuous gradient Discontinuous Continuous 45-60 min
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Two-chamber device for continuous gradients AB M T SB P
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The Gradient Master B
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Gradient Master profiles from 10% and 40% iodixanol at 80° and 20 rpm: effect of time Density (g/ml) Fraction Number 13579 1.07 1.09 1.11 1.13 2 min 2.5 min 3.0 min
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Swinging-bucket rotor axis of rotation At rest g Spinning g
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Fixed-angle and vertical rotors Fixed-angle Vertical g 1g
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Axis of rotation Vertical Swinging-bucket Sedimentation path length of rotors
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Sample/gradient in vertical rotor Axis of rotation AB
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Self-generated gradients At 360,000g av iodixanol molecules will start to sediment g time
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Self-generated gradient strategy 1g1g 1g1g 350,000g
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Near-vertical rotors are best of all
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Iodixanol self-generated gradient requirements Rotors with a short sedimentation path length ~ 17 mm RCF of 180,000-350,000g av
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Effect of time on iodixanol self-generated gradient in the Beckman TLN100 at 365,000g Fraction Number Density (g/ml) 13579111315 1.00 1.05 1.10 1.15 1.20 1.25 1.30 3 h 15% iodixanol 1 h 3 h 1 h 20% iodixanol
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Fraction Number 357911 Density (g/ml) 1 1.0 1.1 1.2 1.3 15% (170,000g) 30% (170,000g) 15% (353,000g) 30% (353,000g) Effect of RCF and [iodixanol] in Beckman VTi65.1 (3 h)
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Removal of banded material using a syringe
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Collecting a band from a sealed tube
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P Gilson Fraction Collector 96-well plate Harvest gradient into equal volume fractions by tube puncture
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Upward displacement P Perfluorodecalin P
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P 2 P 3 P 4 Labconco Auto Densi-flow collects from meniscus B P 1 C M EP
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Labconco Auto Densi-flow linked to a Gilson FC205 Fraction Collector MB
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