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Microbial Diversity in Drain Hole Waters of the Henderson Mine John R. Spear Jason Sahl Division of Environmental Science and Engineering Colorado School of Mines, Golden, CO jspear@mines.edu
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$125 x 10 6
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Amount spent in the U.S. on marshmallows in 2005
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What Is Life?
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You are here Euryarchaeota Crenarchaeota A “Map” of Life Euryarchaeota Crenarchaeota N.R. Pace, Science, 1997
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Molecular Method Env. Sample Bulk DNA/RNA Extraction Community rRNA/rDNA Clones PCR Cloning rRNA/rDNA Sequences Sequencing Phylogenetic Trees Databases
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7150’ DH-3 Data Fungus Sulfate Reducing Bacteria
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7025’ DH-1 Data Fungus Sulfate Reducing Bacteria
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7025’ DH-1-Post Packer Data Fungus Sulfate Reducing Bacteria
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7025’ DH-4-Post Packer Data Fungus Sulfate Reducing Bacteria
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DH Chemistry
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HM
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Conclusions Potential for 3 new groups (phyla) of Bacteria!! Something is happening with N!! Community shift pre- verses packed- drill holes. Surprising diversity for a subsurface. Low abundance of both Archaea and Eucarya! Publish?
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Thanks To: My Start-up money…. Team Bio--Tom K., Jeff M., Alexis T., Betsy S., Jeff W., Kevin M. HUSEP Folks Henderson Mine and Chip deWolfe
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“If it wasn’t for the optimist, the pessimist would never know…. how happy he wasn’t.”
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Henderson, New Drill Core Plan, to drill a core into the HUSEP facility area For some portion of that: –Take a segment for biological consideration Sterile?BEADS + Tracer Core collection--on site Core sample sections to Socorro, CSM, CU –Continue drilling to depth
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Henderson Mine, 2 Nov 05
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Molecular Method Env. Sample Contact Slide Bulk DNA/RNA Extraction Community rRNA/rDNA Clones PCR Cloning = Method= Result rRNA/rDNA Sequences / Databases Nucleic Acid Probes Sequencing Probe Design Whole-Cell Hybridization (FISH) Phylogenetic Trees Nucleic Acid Hybridization
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DH-2, DH-3 + ???? To Do…. Water = 1.5’ PVC Pipe Inserted with Glass and/or Fe Growth Slides Anoxic H 2 O out
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DH-1 Water Chemistry + Cultures SpeciesConcentration Si4+0.05 mM Ca2+8.7 mM Mg2+1.3 mM Al3+4.8 mM Na+7.9 mM Sr2+0.04 mM K+1.0 mM FeT1.5 mM Mn2+21 mM F-12 mM Cl-0.15 mM NO2-Not detected NO3-1.0 mM Br-Not detected PO43-Not detected SO42-48 mM DH-1 at 7150’, pH 5.8 Culture efforts: Swanner & Templeton, CU: DH-13 (Fe + Mn) DH-33 (Mn) DH-42 (Fe + Mn)
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