1. The BioCADDIE / FORCE11 Data Citation Pilot © 2015 FORCE11.orgFORCE11.org Tim Clark, Ph.D. Harvard Medical School & Massachusetts General Hospital Maryann Martone, Ph.D., University of California at San Diego October 13, 2015

2. Background BD2K Aim #1: “To facilitate broad use of biomedical digital assets by making them discoverable, accessible and citable.” (NIH 2015) 1 Data robustly archived, and directly cited in journal articles can provide powerful input to BioCADDIE content and operations. Significant work has been done on data citation and will provide a foundation on which to proceed. Several top-tier publishers are planning to implement this approach but need assistance. This pilot will organize a coordination activity and provide communication across participating groups

3. Background Documents CODATA & National Academies Reports (2012-2013) 2, 3 Joint Declaration of Data Citation Principles / JDDCP (2014) 4 Collins & Tabak (2014) on NIH reproducibility initiatives 5 JDDCP Implementation Guidelines (Starr et al. 2015) 6 ELIXIR/BD2K& BioCADDIE/FORCE11 Workshops (Jan 2015) 7 BioCADDIE supplement for Data Citation Implementation Pilot, subcontract to FORCE11 thru UCSD (Oct 2015)

4. Objectives Provide coordination & guidance for early adopters of data citation: publishers, repositories and ID / metadata services. Help establish one or more benchmark implementations by important early adopters across key use cases. Focus on archiving and citing primary research data. Coordinate with CODATA’s international workshops on data citation, complementary to the focused early adopter pilot. Publish several peer-reviewed articles and a final report. Provide report on lessons learned to the community.

5. DCIP Executive Committee Tim Clark, Harvard Medical School. Carole Goble, U of Manchester, ELIXIR Deputy Director for the UK. Jeff Grethe, UC San Diego, BioCADDIE Executive Committee. Simon Hodson, Executive Director, CODATA. Maryann Martone, UC San Diego & Hypothes.is. Jo McEntyre, EMBL/EBI, European PubMed Central. Joan Starr, California Digital Library.

6. Agreed Participants to Date Publishers Elsevier, PLoS, Biomed Central, eLife, F1000, GigaScience Repositories Dryad, Figshare, PDB, European PMC (EMBL/EBI) Columbia University Library, Harvard Dataverse Metadata & ID California Digital Library, DataCite, CrossRef, ORCID Standards, Academic & Scholarly Organizations JATS Standing Committee, CODATA, ELIXIR BioCADDIE

7. Approach Publishers use JATS 1.1d2/3 schema for documents common data citation workflows & core metadata Repositories use JDDCP implementation guidelines Authors provide authors a common FAQ web page assist publisher operations group in supporting authors

8. Proposed Deliverables 1.Principles and Entailments for Direct Scientific Data Citation on the Web - peer reviewed archival version of the JDDCP with background material 2.Five Steps to Citing Research Data - summary JDDCP implementation guidelines 3.Citing Data with the Journal Article Tag Suite - detailed guidance for using the 1d.2 and 1d.3 NISO JATS revisions for data citation in publishing 4.Data Citation FAQ - dynamic feature on the FORCE11 site 5.Data Citation Ask the Experts - social media feature on FORCE11 website 6.Ongoing input to CODATA Global Workshops on Data Citation 7.Ongoing implementation guidance and coordination across Pilot stakeholders 8.Citing Data in Action: Experiences and lessons learned from the BioCADDIE Data Citation Implementation Pilot - 1 year report on the pilot

9. BioCADDIE Integration All metadata and identifiers available for harvesting Ensure that archived content is indexable Coordination with BioCADDIE use case & activities

10. To Sum Up Data Citation Implementation Pilot over 1 year Organize “early adopter” stakeholders Provide expert feedback, authoritative guidance Enable stakeholders to implement successfully Publish guidance and lessons learned Strong BioCADDIE support and integration

11. References 1. NIH: About BD2K. National Institutes of Health, 2015. Accessed October 12, 2015. [https://datascience.nih.gov/bd2k/about]. 2. Uhlir P: For Attribution - Developing Data Attribution and Citation Practices and Standards: Summary of an International Workshop (2012) In.: The National Academies Press; 2012: 220 [http://www.nap.edu/catalog.php?record_id=13564]. 3.CODATA/ITSCI Task Force on Data Citation: Out of cite, out of mind: The Current State of Practice, Policy and Technology for Data Citation. Data Science Journal 2013, 12:1-75 4.Data Citation Synthesis Group: Joint Declaration of Data Citation Principles. Edited by Martone M. San Diego CA: Future of Research Communication and e-Scholarship (FORCE11); 2014 [https://www.force11.org/datacitation]. 56.Collins FS, Tabak LA: Policy: NIH plans to enhance reproducibility. Nature 2014, 505(7485):612 6.Starr J, Castro E, Crosas M, Dumontier M, Downs RR, Duerr R, Haak LL, Haendel M, Herman I, Hodson S, ́ JH, Kratz JE, Lin J, Nielsen LH, Nurnberger A, Proell S, Rauber A, Sacchi S, Smith A, Taylor M, Clark T: Achieving human and machine accessibility of cited data in scholarly publications. PeerJ 2015, 1: e1.