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Bioinformatics zInterdisciplinary science that involves developing and applying information technology for analyzing biological data Overview of Bioinformatics.

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Presentation on theme: "Bioinformatics zInterdisciplinary science that involves developing and applying information technology for analyzing biological data Overview of Bioinformatics."— Presentation transcript:

1 Bioinformatics zInterdisciplinary science that involves developing and applying information technology for analyzing biological data Overview of Bioinformatics

2 BLAST zThe BLAST programs (Basic Local Alignment Search Tools) are a set of sequence comparison algorithms that are used to search international sequence databases for regions of similarity between sequences

3 BLAST http://www.ncbi.nlm.nih.gov/

4 BLAST

5 Program Description blastp Compares an amino acid query sequence against a protein sequence database. blastn Compares a nucleotide query sequence against a nucleotide sequence database. blastx Compares a nucleotide query sequence translated in all reading frames against a protein sequence database. You could use this option to find potential translation products of an unknown nucleotide sequence.

6 BLAST ACATTTGCTT CTGACACAAC TGTGTTCACT AGCAACCTCA AACAGACACC ATGGTGCACC TGACTCCTGA GGAGAAGTCT GCCGTTACTG CCCTGTGGGG CAAGGTGAAC GTGGATGAAGTTGGTGGTGA GGCCCTGGGC AGGCTGCTGG TGGTCTACCC TTGGACCCAG AGGTTCTTTGAGTCCTTTGG GGATCTGTCC

7 BLAST

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11 BLAST for Beginners Tutorial


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