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Standards for Data Sharing Program Oversight Chair: Colin Ingram, Newcastle UK.

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Presentation on theme: "Standards for Data Sharing Program Oversight Chair: Colin Ingram, Newcastle UK."— Presentation transcript:

1 Standards for Data Sharing Program Oversight Chair: Colin Ingram, Newcastle UK

2 www.incf.org/about/programs/datasharing Mission: to develop metadata and data standards for reproducible research; to develop standards for archiving, storing, sharing, and re-using neuroscience data and databases

3 The Publication(s) of the Future… (towards scientific reproducibility) Analysis Results Interpretation Data Data Repositories Standardized Workflow Description Meta-Data Repositories Literature Repositories

4 www.incf.org/about/programs/datasharing Update on Deliverables: Ethics Barrier: I don’t think I’m allowed to share this data… Solution: Repository of successful IRB’s to promote neuroimaging sharing

5 Data Flow and Stages of Data Sharing Opportunities Barrier: “Data sharing is too hard…” Solution: One-Click Data Sharing Tool Data is anonymized and pushed to the INCF XNAT server. User is prompted for missing metadata. QA is performed and the results are available on line. The user is notified by e-mail. One-Click Data Share Planned extensions: Promote to community Extend QC for structural & diffusion datasets Improvements to the user interface & ease of installation NIFTI support Process large databases to establish distribution of QC across scanners & populations See http://xnat.incf.org/ to access this resource.http://xnat.incf.org/

6 One-Click Data Share Drag-n-Drop DICOM directory onto ‘INCF Push’ app

7 www.incf.org/about/programs/datasharing The NI-DM data model Capture content from data and workflows (provenance) Apps for storing and querying NI-DM stores Provenance and NI-DM:

8 www.incf.org/about/programs/datasharing The NI-DM data model Provenance and NI-DM:

9 www.incf.org/about/programs/datasharing Capture content from data and workflows (provenance) Apps for storing and querying NI-DM stores Provenance and NI-DM: Federated Query

10 www.incf.org/about/programs/datasharing Apps for storing and querying NI-DM stores Provenance and NI-DM:

11 www.incf.org/about/programs/datasharing CloudHack at OHBM Meeting, June 2013 1000FC (NITRC) data registered to INCF DataSpace Keator, D. B., Helmer, K., Steffener, J., Turner, J. A., Van Erp, T. G., Gadde, S., Ashish, N., et al. (2013). Towards structured sharing of raw and derived neuroimaging data across existing resources. Accepted in NeuroImage. iPython notebook repository - https://github.com/ni-/notebookshttps://github.com/ni-/notebooks NI-DM notebook tutorial slides: http://slideviewer.herokuapp.com/url/raw.github.com/ni-/notebooks/master/NIDMIntro.ipynb#/ http://slideviewer.herokuapp.com/url/raw.github.com/ni- /notebooks/master/FreeSurferObjectModel.ipynbhttp://slideviewer.herokuapp.com/url/raw.github.com/ni- /notebooks/master/FreeSurferObjectModel.ipynb Recent Outreach Efforts:

12 www.incf.org/about/programs/datasharing Current Activities and Future Directions:

13 www.incf.org/about/programs/datasharing Welcome new members E  common work (DM-EEG-MEG & API) Ni-DM Training activities - for developers - for neuroimagers nifti format – the revenge ? yellow pages of neuroimaging datasets work with editors for machine readable method section (w/ NIF) Current Activities and Future Directions:

14 www.incf.org/about/programs/datasharing Standardizing/using the vocabulary/ontology Upcoming Taskforce Meetings August 2013 at INCF congress, Stockholm November 2013 at SfN, San Diego January/February - ??? June 2014 at OHBM, Hamburg Current Activities and Future Directions:


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