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www.jki.bund.de Population level information management for crop wild relatives (PLIS) C.U. Germeier, J.M. Iriondo, L. Frese, C. Höhne, M. Enders, S.Kell
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Population level information systems for model crops (Avena, Beta, Brassica, Prunus) Tasks -Development of information models for in situ management of plant genetic resources field work on the population level. -Integration of historical occurrence (distribution) data. -Propose concepts for data exchange and the integration of project results in existing information systems (e.g. the European Central Crop Databases). -Development of a web application for information on already known sites and additional tools supporting in situ field work.
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Ex Situ Accession In Situ (Protected) Area Population Level Information in the world of genetic resources documentation Occurrence is collected n 1 is within a 1 n Characterisation Evaluation Site Site in ex situ PGR databases: - mostly rough description (locality string) like: Cabo de Gata, 2 km E of. - if geographic coordinates are available, it is only point coordinates, no extension. Site definition: geographically described or referenced locality, but without explicit extension. Area definition: geographically described with explicit extension.
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Ex Situ Accession In Situ (Protected) Area Population Level Information in the world of genetic resources documentation Occurrence is collected n 1 is within a 1 n Characterisation Evaluation Site Location (administrative unit) is within a 1 n Ecogeography: Climate Soil Habitat Vegetation Individual Patch Population? 1 n n 1 Monitoring 1 n Natural Environment Political Environment is within a 1 n
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Implementations: CWR CyberTracker (Mobile) CWRIS-PLIS (Web)
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Techologies Mobile Web CyberTracker Software -Workflow oriented -Graphical configuration of workflows JBoss Web Development Suite -Object oriented -PL: Java – JEE5 Frameworks (Java Server Faces (JSF) – Seam – Hibernate) -GMaps4Jsf: an Interface for the use of Google Maps Services with JSF
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Data Sources / Downloads EUROSTAT administrative geographic units: NUTS (Nomenclature of territorial units), LAU (Local Administrative Units) Protected areas: NATURA 2000 sites database Taxonomic reference: CWRIS - Euro + Med, IDBB, EADB Occurrence and genetic resources data: The Global Biodiversity Information Facility (GBIF) The European Internet Search Catalogue (EURISCO) The USDA Germplasm Resources Information Network (GRIN). Data downloadable from PCGRIN The European Central Crop Databases (IDBB, EADB)
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Searching through a geographic hierarchy Data acquisition with Cybertracker Web Search
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Searching through a taxonomic hierarchy Data acquisition with Cybertracker Web Search
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Working with historical data
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Working with historical data: Display result sets on a map
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Working with historical data: “Correct” results
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Working with historical data: “Correct” results
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Protected Area Service Coordinate NUTS - LAU Service Location CWRIS Portal(s) (Crop, Management) Site Protected Area Occurrence Taxon Working with Historical Data: Suggestions for a Data Harmonisation Landscape Taxonomy Service(s) Taxon name System Valid name Synonyms Site Interpreter „Locality String“ NUTS-LAU Unit Protected Area Taxon Interpreter Taxon Location Interpreter Coordinate Transformer Occurrence Service e.g. GBIF Occurrence GBIF
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Example: B. patellaris: Cabo de Gata, 2 km E of Individual Patch Population? CWR Field Data: Levels of Aggregation Patch:Agglomeration of individuals of the same species: on revisiting, if a recorded patch area overlaps with a previous recorded one, they are considered the same patch. After fusion one of them is considered successor of both. Individual: Plant found at a certain time on a certain place. Can be revisited, if marked. Population definition: Individuals with sexual recombination. ->defined genetically, not geographically ->in the field we can record only individuals and patches ->aggregation to populations needs genetic analysis Reference point (Site): geogr. described or referenced without explicit extension.
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Levels of aggregation in the CyberTracker Application - natural structuration
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Levels of aggregation in the CyberTracker Application – experimental designs
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AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira Thanks for your attention
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