1. rsimGmacs Buck Stockhausen AFSC

2. rsimGmacs: An R-based simulation tool for testing/developing Gmacs Provides an independent testing platform – Embodies Gmacs equations – Coded in R – Provides redundancy checking Outputs: – R list object – Diagnostic plots – Data input file to Gmacs Available at https://github.com/seacode/rsimGmacs.git https://github.com/seacode/rsimGmacs.git Package dependencies: ggplot2, reshape2, tcltk

3. Package Documentation

4. Running rsimGmacs res<-runSim.BBRKC(pdf=‘rsimCIE.pdf’)

5. Configuration File (1)

6. Configuration File (2)

7. Configuration File (3)

8. Configuration File (4)

9. Configuration File (5)

10. Running rsimGmacs res<-runRsim.BBRKC() res: list of lists – mc: list object for model configuration dims: list object with model dimensions info params: list object with model parameters info – mp: list object for model processes (rates) – mr: list object for model results R_yxz: recruitment by by y,x,z iN_xmsz: initial abundance by x,m,s,z N_yxmsz: 5-d array of population abundance by y,x,m,s,z F_list: list of fisheries-related results N_vyxmsz: 6-d array of abundance in surveys (v) by y,x,m,s,z

11. Diagnostic Plots see rsimCIE.pdf

12. Gmacs input file See gmacs.input.dat