1. Chapter 13: Genetic Engineering

2. Selective Breeding Has been occurring for thousands of years Ex: (dog breeds, agriculture) Has been occurring for thousands of years Ex: (dog breeds, agriculture) Takes advantage of naturally occurring traits in a population Takes advantage of naturally occurring traits in a population Two types Two types

3. Hybridization: crossing two dissimilar organisms to get the best traits of both organisms Hybridization: crossing two dissimilar organisms to get the best traits of both organisms hybrids are often hardier/stronger than either parent hybrids are often hardier/stronger than either parent ex: mules (cross between horse and donkey), ligers (lion/tiger) ex: mules (cross between horse and donkey), ligers (lion/tiger) Selective Breeding

4. Hybridization  The crossing of two dissimilar organisms to get the best of both organisms hybrids are often hardier and stronger than either parent hybrids are often hardier and stronger than either parent Donkey + Horse = Mule Lion + Tiger = Liger

5. Inbreeding: crossing two organisms that are very similar to retain desirable characteristics. Inbreeding: crossing two organisms that are very similar to retain desirable characteristics. Can lead to recessive genetic disorders appearing frequently because the organisms are so similar genetically. Can lead to recessive genetic disorders appearing frequently because the organisms are so similar genetically. Ex. Maintaining “purebred” dog breeds Ex. Maintaining “purebred” dog breeds Selective Breeding

6. Increasing Variation If the desired characteristic is not present, scientists have induced mutations in hope of it causing the right effect If the desired characteristic is not present, scientists have induced mutations in hope of it causing the right effect Success stories: Success stories: Oil-eating bacteria- used to clean up oil spills Oil-eating bacteria- used to clean up oil spills Creating polyploidy (3+ sets of chromosomes) plants- usually larger and stronger Creating polyploidy (3+ sets of chromosomes) plants- usually larger and stronger Examples: bananas, citrus Examples: bananas, citrus

8. That was the “old” way of manipulating inheritance. Now, we can isolate specific DNA sequences and modify the code in what is called genetic engineering. That was the “old” way of manipulating inheritance. Now, we can isolate specific DNA sequences and modify the code in what is called genetic engineering. Genetic Engineering

9. How do they get it out of the cells? o DNA extraction- lysing the cells and separating the excess cell parts from the DNA by using a centrifuge Dissolved DNA cell junk

10. How do they cut the pieces they want? Restriction enzymes- they cut DNA at a specific site (100s of them that identify different sequences of base pairs know as recognition sequences- they are a palindrome- read the same 5’-3’ in each direction) Restriction enzymes- they cut DNA at a specific site (100s of them that identify different sequences of base pairs know as recognition sequences- they are a palindrome- read the same 5’-3’ in each direction) CTTAAG is cut CTTAAG GAATTCGAATTC CTTAAG is cut CTTAAG GAATTCGAATTC

11. The two ends are known as “Sticky” because they reattach to a complementary end very easily because if chemical attractions The two ends are known as “Sticky” because they reattach to a complementary end very easily because if chemical attractions

12. Using gel electrophoresis Using gel electrophoresis Different fragments end up being different lengths Different fragments end up being different lengths They are run through gel electrophoresis where electrical current pull DNA fragments through an agarose gel. DNA mixtures are placed in a well in agarose and electrical current is switched on. They are run through gel electrophoresis where electrical current pull DNA fragments through an agarose gel. DNA mixtures are placed in a well in agarose and electrical current is switched on. The small fragments travel faster, and the larger fragments cannot travel as far. The small fragments travel faster, and the larger fragments cannot travel as far. How are the pieces identified? DNA fingerprint produced by gel electrophoresis

17. So what does that tell us? relatedness of individuals (paternity tests), relatedness of individuals (paternity tests), relatedness of groups of organisms (closest related species), or relatedness of groups of organisms (closest related species), or relatedness of DNA to suspects and evidence in a crime scene. relatedness of DNA to suspects and evidence in a crime scene.

18. Genetic Engineering Gene sequencing: using a gel electrophoresis method (  ) or using a machine (below), scientists can figure out genes and entire genomes (all the genes in an organisms) Gene sequencing: using a gel electrophoresis method (  ) or using a machine (below), scientists can figure out genes and entire genomes (all the genes in an organisms)

19. How can we sequence DNA? Mix unknown DNA fragment with DNA polymerase and nucleotides to copy the DNA. Mix unknown DNA fragment with DNA polymerase and nucleotides to copy the DNA. The nucleotides added will also have special dideoxynucleotides (didNTP) with attached dyes. The nucleotides added will also have special dideoxynucleotides (didNTP) with attached dyes. Newly synthesized DNA will be made but will stop each time a didNTP nucleotide is added. Newly synthesized DNA will be made but will stop each time a didNTP nucleotide is added.

20. How can we sequence DNA? The DNA is run on a gel and the fragments will make a colored banding pattern in the order of bases (A, T, G, or C) The DNA is run on a gel and the fragments will make a colored banding pattern in the order of bases (A, T, G, or C) Watch the animation on the website highlighted in the resources page of my website. Watch the animation on the website highlighted in the resources page of my website.

21. Genetic Engineering We can now find and isolate certain genes. We can now find and isolate certain genes. you can test for certain genetic disorders, and predict chances of inheritance you can test for certain genetic disorders, and predict chances of inheritance scientists can study the gene’s function and how to treat people with the genetic disorder scientists can study the gene’s function and how to treat people with the genetic disorder Ex: what gene causes diabetes? Breast cancer? Ex: what gene causes diabetes? Breast cancer? We have completed the Human Genome Project mapping all human genes We have completed the Human Genome Project mapping all human genes

22. Gene Therapy Gene Therapy: a faulty gene is replaced with a normal working gene Gene Therapy: a faulty gene is replaced with a normal working gene See a real gene therapy success story with a blind dog (click) See a real gene therapy success story with a blind dog (click)

23. PCR- Polymerase Chain Reaction PCR- Polymerase Chain Reaction a primer is added to the beginning of the isolated desired gene a primer is added to the beginning of the isolated desired gene DNA is heated to break the hydrogen bonds between the nitrogenous bases DNA is heated to break the hydrogen bonds between the nitrogenous bases DNA polymerase attaches and replicated sides, using both as templates DNA polymerase attaches and replicated sides, using both as templates Copies are made at an exponential rate of only the desired gene Copies are made at an exponential rate of only the desired gene How do we get a lot of copies of a specific DNA sequence we want?

24. Recombinant DNA Manipulating the presence or absence of a genes by adding or cutting out gene sequences Manipulating the presence or absence of a genes by adding or cutting out gene sequences Combining DNA from two different sources by cutting with the same restriction enzymes creates DNA that has been modified Combining DNA from two different sources by cutting with the same restriction enzymes creates DNA that has been modified

26. Transformation- a cell takes in DNA from outside the cell and incorporates it into its own DNA (bacterial plasmids, chromosomes in plants and animals) Transformation- a cell takes in DNA from outside the cell and incorporates it into its own DNA (bacterial plasmids, chromosomes in plants and animals)

27. Applications of Genetic Engineering Transgenic Organisms: organisms that contain DNA from other species Transgenic Organisms: organisms that contain DNA from other species Transgenic bacteria: Transgenic bacteria: can produce human insulin (for diabetes) can produce human insulin (for diabetes) human growth hormone human growth hormone blood clotting factor (for hemophilia) blood clotting factor (for hemophilia)

28. Transgenic Organisms Transgenic animals: Transgenic animals: study human genes in animals study human genes in animals produce organisms that can make human proteins produce organisms that can make human proteins cows that can grow faster with multiple copies of growth hormone cows that can grow faster with multiple copies of growth hormone A natural protein produced in the milk of GEM and other transgenic cows kills the bacteria that cause mastitis.

29. Transgenic Organisms Transgenic plants: genetically modified foods Transgenic plants: genetically modified foods seedless grapes and watermelons seedless grapes and watermelons rice with vitamin enhancement rice with vitamin enhancement pest-resistant crops (so chemical pesticides do not need to be used) pest-resistant crops (so chemical pesticides do not need to be used)

31. Cloning Cloning: creating an organism whose genes are exactly the same as a single parent Cloning: creating an organism whose genes are exactly the same as a single parent All bacteria and organisms that reproduce asexually are technically clones All bacteria and organisms that reproduce asexually are technically clones Multicellular organisms are not as easy to clone- a mammal was cloned officially in 1997—Dolly Multicellular organisms are not as easy to clone- a mammal was cloned officially in 1997—Dolly

32. Cloning The nucleus of an adult, donor egg is removed The nucleus of an adult, donor egg is removed This empty egg is fused with another adult somatic cell’s NUCLEUS (diploid, 2N) This empty egg is fused with another adult somatic cell’s NUCLEUS (diploid, 2N) The cell is stimulated with electric shock to divide normally by mitosis and the zygote is implanted into a surrogate mother The cell is stimulated with electric shock to divide normally by mitosis and the zygote is implanted into a surrogate mother The baby is born of the surrogate and has the EXACT same genes as the organism who donated the 2N nucleus. The baby is born of the surrogate and has the EXACT same genes as the organism who donated the 2N nucleus. The difference between regular reproduction and cloning  (click)

33. Cloning videos Scientists removing the Egg nucleus: http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/enucleatio n.mpg Scientists removing the Egg nucleus: http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/enucleatio n.mpg http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/enucleatio n.mpg http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/enucleatio n.mpg Scientists inserting the donor somatic cell nucleus into the empty egg: http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/transfer.m pg Scientists inserting the donor somatic cell nucleus into the empty egg: http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/transfer.m pg http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/transfer.m pg http://learn.genetics.utah.edu/content/tec h/cloning/whatiscloning/images/transfer.m pg

34. Cloning- practice Clone Mimi the mouse! (click) Clone Mimi the mouse! (click)

36. Ethics: moral principles and values that a society should adhere to in determining the use of scientific discoveries Ethics: moral principles and values that a society should adhere to in determining the use of scientific discoveries What are some concerns with this new Biotechnology?

37. What is ethically acceptable to use while testing on animals? What is ethically acceptable to use while testing on animals? What could genetically modified crops do to the environment? What could genetically modified crops do to the environment? What does consuming genetically modified food do to us long term? What does consuming genetically modified food do to us long term? What are some concerns with this new Biotechnology?

38. Once able to find and fix faulty genes with gene therapy, what is the line we draw on fixing genes? Could we fix not only faulty genes, but undesirable ones? Once able to find and fix faulty genes with gene therapy, what is the line we draw on fixing genes? Could we fix not only faulty genes, but undesirable ones? Could we choose our children’s eye color? Could we choose our children’s eye color? If we can test for genetic disorders at birth, who can access this information? Could discrimination occur based on your genes? If we can test for genetic disorders at birth, who can access this information? Could discrimination occur based on your genes? What are some concerns with this new Biotechnology?